Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18b10
(383 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_0472 + 21145523-21145892,21146098-21146141,21146916-211469... 31 0.24
07_03_0876 - 22215688-22215789,22216051-22216206,22217227-222172... 29 1.3
07_03_1697 - 28795521-28797328,28797430-28797550 27 3.8
04_04_1015 - 30115377-30115477,30115570-30115615,30116491-301165... 27 5.1
04_04_1008 - 30054674-30054774,30054867-30054912,30055788-300558... 27 5.1
10_08_0642 - 19525774-19526554,19526657-19527075 27 6.7
09_03_0192 + 13344558-13344942,13345038-13345591 27 6.7
02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,443... 27 6.7
11_05_0004 - 18269416-18269473,18270319-18270509,18271061-182720... 26 8.9
>06_03_0472 +
21145523-21145892,21146098-21146141,21146916-21146974,
21147090-21147162,21147281-21147342,21147424-21147499,
21147618-21147692,21148699-21148782,21148947-21149015,
21149614-21149673,21150211-21150288,21150468-21150556,
21150868-21150964,21151084-21151137,21151643-21151738,
21151930-21152118,21152200-21152277,21152511-21152555,
21152728-21152820,21152907-21152987
Length = 623
Score = 31.5 bits (68), Expect = 0.24
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Frame = -2
Query: 382 FFFGILISHL--FLNVYFISNHSDLSIFMQFLKLQLRQLLSKNIFIKSIFFLNVTLDFEG 209
FF + ++ + +NV+F+ NH D+ + L + ++ + + +K + N T G
Sbjct: 469 FFAALFLASIGMLINVHFLWNHVDILLAAVILVITVKTFIVA-VVVKGFGYSNKTSLLVG 527
Query: 208 VSINEAGFGFFLLLS 164
+S+ + G F+LLS
Sbjct: 528 MSLAQIGEFAFVLLS 542
>07_03_0876 -
22215688-22215789,22216051-22216206,22217227-22217247,
22217311-22217580,22217793-22219178,22220562-22220621
Length = 664
Score = 29.1 bits (62), Expect = 1.3
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 84 QENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPSKSNVTFKKKMDF 251
++N + F +A G T N +Q+ K + PNP +FI+ S N K F
Sbjct: 533 RDNLQQFFKAVATRDGR-TAANCTLQLSKQQSCPNPVAFIEIASFLNQELDKTFSF 587
>07_03_1697 - 28795521-28797328,28797430-28797550
Length = 642
Score = 27.5 bits (58), Expect = 3.8
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -2
Query: 163 ICTLAFKIVQKPETLAK*GKTHRKFSC 83
IC+ FK+VQ P A KT RK C
Sbjct: 431 ICSSCFKLVQVPADFAVSTKTVRKLRC 457
>04_04_1015 -
30115377-30115477,30115570-30115615,30116491-30116590,
30116676-30116771,30119519-30119556,30119623-30119733,
30119820-30119951,30120024-30120263,30120532-30120700,
30120994-30121493,30121581-30121691,30121802-30122133,
30122603-30122737,30122839-30122988,30123809-30123947
Length = 799
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 234 KKKMDFIKIFLDNNWRNCNFKN 299
K++ +FIK+ L + R+CNFK+
Sbjct: 407 KERFEFIKVQLGSFLRSCNFKD 428
>04_04_1008 -
30054674-30054774,30054867-30054912,30055788-30055887,
30055973-30056068,30058816-30058853,30058920-30059030,
30059117-30059248,30059321-30059560,30059829-30059997,
30060291-30060790,30060878-30060988,30061099-30061430,
30061900-30062034,30062136-30062285,30063106-30063244
Length = 799
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/22 (45%), Positives = 17/22 (77%)
Frame = +3
Query: 234 KKKMDFIKIFLDNNWRNCNFKN 299
K++ +FIK+ L + R+CNFK+
Sbjct: 407 KERFEFIKVQLGSFLRSCNFKD 428
>10_08_0642 - 19525774-19526554,19526657-19527075
Length = 399
Score = 26.6 bits (56), Expect = 6.7
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = -2
Query: 340 YFISNHSDLSIFMQFLKLQLRQLLSKNIFIKSIFFLNVTLDFEGVSINEAGF 185
YF++N ++F + K +L QLLS I S TLDF N+A F
Sbjct: 320 YFLNNSIASTVFTEKRKTELHQLLSSQ--INSYV---GTLDFVSCDTNQAKF 366
>09_03_0192 + 13344558-13344942,13345038-13345591
Length = 312
Score = 26.6 bits (56), Expect = 6.7
Identities = 17/52 (32%), Positives = 31/52 (59%), Gaps = 3/52 (5%)
Frame = +3
Query: 147 NARVQIDKS--KKNPNPASFIDTPSKSNVTFKKKMDFI-KIFLDNNWRNCNF 293
+AR+Q++K + +P I P+ +V K++ I KIF+DNN ++ +F
Sbjct: 203 SARLQLNKEGVELKEDPRMGIGKPTGKSVKKLKELAGIAKIFVDNNLKDSDF 254
>02_01_0597 - 4433105-4433467,4433671-4433860,4434569-4434786,
4434882-4436556,4437137-4438113
Length = 1140
Score = 26.6 bits (56), Expect = 6.7
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Frame = +3
Query: 165 DKSKKNPNPASFIDTPSKSNVTFKKKMDFIKIFLDNNWRNC-NFKNCINIERSE 323
DKSK+ S ++ + KK+++ + LD + NC +NC++ R E
Sbjct: 847 DKSKRLDETESKLNALVDEVNSLKKELEHTQGLLDESQMNCVQLENCLHEAREE 900
>11_05_0004 -
18269416-18269473,18270319-18270509,18271061-18272004,
18272083-18272254,18272332-18272407,18272498-18272617,
18272795-18272959,18273048-18273138,18273673-18273757,
18273873-18274043,18274151-18274207,18274290-18274385,
18275223-18275365,18275464-18275530
Length = 811
Score = 26.2 bits (55), Expect = 8.9
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = +3
Query: 126 SGFWTILNARVQIDKSKKNPNPASFIDTPSKSNVTFKKK 242
S FW +NA+ Q +S N P+S+ P + + K+
Sbjct: 521 SNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQ 559
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,428,912
Number of Sequences: 37544
Number of extensions: 115263
Number of successful extensions: 225
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 224
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 225
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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