Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18b10
         (383 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical pr...    26   7.9  
Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical pr...    26   7.9  
AL032636-1|CAA21605.1|  343|Caenorhabditis elegans Hypothetical ...    26   7.9  

>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 20/71 (28%), Positives = 32/71 (45%)
 Frame = +3

Query: 66  LHHSPAQENFR*VFPYLAKVSGFWTILNARVQIDKSKKNPNPASFIDTPSKSNVTFKKKM 245
           +HH   QE+ + + P      G W+  N+ + I        P  +   PS SNV   +KM
Sbjct: 731 VHHVIKQESMKDIPPGSPASPGAWSGSNSSL-IFMPSSTQAPEHYA-IPSVSNVLMFRKM 788

Query: 246 DFIKIFLDNNW 278
           + I    ++NW
Sbjct: 789 EHIFYSSESNW 799


>Z81593-3|CAB04741.1|  332|Caenorhabditis elegans Hypothetical
           protein T20B3.3 protein.
          Length = 332

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 17/65 (26%), Positives = 30/65 (46%)
 Frame = -2

Query: 373 GILISHLFLNVYFISNHSDLSIFMQFLKLQLRQLLSKNIFIKSIFFLNVTLDFEGVSINE 194
           GI I  LFL V+F++  +D  +  Q  K   ++ +  +   +  F L + + F  V +  
Sbjct: 199 GIFIMVLFLEVWFLAYMTDRKLKQQMTKTMSQKTVDLHRKFQRAFILQLLIPFLIVFVPL 258

Query: 193 AGFGF 179
              GF
Sbjct: 259 GYIGF 263


>Z77664-2|CAB01217.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 KNPNPASFIDTPSKSNVTFKKKMDFI 254
           ++P P S ID+P K  V   K MDF+
Sbjct: 392 RSPAPVSTIDSPLKPEVPVIKPMDFM 417


>Z73970-5|CAA98248.1|  643|Caenorhabditis elegans Hypothetical
           protein C29A12.6 protein.
          Length = 643

 Score = 27.5 bits (58), Expect = 3.4
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 177 KNPNPASFIDTPSKSNVTFKKKMDFI 254
           ++P P S ID+P K  V   K MDF+
Sbjct: 392 RSPAPVSTIDSPLKPEVPVIKPMDFM 417


>Z99171-2|CAB16314.1|  710|Caenorhabditis elegans Hypothetical
           protein F47G4.2 protein.
          Length = 710

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 13/59 (22%), Positives = 26/59 (44%)
 Frame = -2

Query: 358 HLFLNVYFISNHSDLSIFMQFLKLQLRQLLSKNIFIKSIFFLNVTLDFEGVSINEAGFG 182
           H     Y     S   ++ Q L+L  +   + ++ +K + F+   ++FE V +    FG
Sbjct: 21  HFNSKSYAFDQESSNEVYAQLLRLDPQWSYNIDLKLKGLSFILTKVNFENVEMGPQTFG 79


>Z92813-2|CAB07284.1|  353|Caenorhabditis elegans Hypothetical
           protein T28A8.2 protein.
          Length = 353

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +3

Query: 282 NCNFKNCINIERSEWFDIKY 341
           N N+  C++I RS++FD+ +
Sbjct: 183 NKNYVTCVHIRRSDFFDVGF 202


>AL032636-1|CAA21605.1|  343|Caenorhabditis elegans Hypothetical
           protein Y40B1B.3 protein.
          Length = 343

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
 Frame = -2

Query: 298 FLKLQLRQLLSKNIFI-KSIFFLNVTLDFEGVSINEAGFGFFLLL 167
           F K ++ QL  +N++I   +  +  TLDFE +      F +FL+L
Sbjct: 128 FHKPKISQLYHENVYICDQMLEIIKTLDFEKIEFWIRTFDYFLIL 172


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,169,516
Number of Sequences: 27780
Number of extensions: 129422
Number of successful extensions: 342
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 342
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 566277334
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)