Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18b02
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    24   1.0  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    21   9.4  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        21   9.4  
AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein p...    21   9.4  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    21   9.4  

>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 23.8 bits (49), Expect = 1.0
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 195 RRLLRYPRSPVNLDRLNISLFAELVVFCHAV*PTRP 302
           R +L YP++ +N    ++SL     +F H   P RP
Sbjct: 33  RPMLPYPQNYINSYLFSLSLAQNNQLFTHHKAPIRP 68


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 279 DRTPPTPQRAKYLGDPNSQDS 217
           + TPP+PQ   Y      QD+
Sbjct: 54  EETPPSPQEVYYHHQTIPQDN 74


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -3

Query: 237 DPNSQDSVGTAADAAMPPVC 178
           +PN  DS+   A++A+  +C
Sbjct: 527 EPNMTDSLTRLANSALDNIC 546


>AF230313-1|AAF64147.1|  210|Tribolium castaneum labial protein
           protein.
          Length = 210

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 279 DRTPPTPQRAKYLGDPNSQDS 217
           + TPP+PQ   Y      QD+
Sbjct: 54  EETPPSPQEVYYHHQTIPQDN 74


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 8/21 (38%), Positives = 11/21 (52%)
 Frame = -3

Query: 279 DRTPPTPQRAKYLGDPNSQDS 217
           + TPP+PQ   Y      QD+
Sbjct: 54  EETPPSPQEVYYHHQTIPQDN 74


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,156
Number of Sequences: 336
Number of extensions: 2233
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)