Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18b01
(636 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical pr... 256 7e-69
Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical p... 68 5e-12
AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine re... 28 4.9
Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical pr... 28 6.4
Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical pr... 28 6.4
D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein. 28 6.4
D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein. 28 6.4
D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein. 28 6.4
D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein. 28 6.4
AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical ... 28 6.4
AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical ... 28 6.4
AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin... 28 6.4
>Z82274-1|CAB05226.1| 165|Caenorhabditis elegans Hypothetical
protein JC8.3a protein.
Length = 165
Score = 256 bits (628), Expect = 7e-69
Identities = 115/162 (70%), Positives = 144/162 (88%)
Frame = +1
Query: 121 MPPKFDPNEIKIVNLRCVGGEVGATSSLAPKIGPLGLSPKKVGDDIAKATSDWKGLKITV 300
MPPKFDP EIKIV LRCVGGEVGATS+LAPK+GPLGLSPKK+G+DIAKAT DWKGLK+T
Sbjct: 1 MPPKFDPTEIKIVYLRCVGGEVGATSALAPKVGPLGLSPKKIGEDIAKATQDWKGLKVTC 60
Query: 301 QLTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKNIKHNGNISLEDVVGIAKIMRNRS 480
+LT+QNR A+I VVPSAA+LI++ LKEPPRDRKK KN+KHNG+++++ ++ IA+IMR RS
Sbjct: 61 KLTIQNRVAKIDVVPSAASLIVKELKEPPRDRKKVKNVKHNGDLTVDTIIKIARIMRPRS 120
Query: 481 MARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 606
MA+ L G+VKEILGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 121 MAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 162
>Z82274-14|CAJ76933.1| 50|Caenorhabditis elegans Hypothetical
protein JC8.3c protein.
Length = 50
Score = 68.1 bits (159), Expect = 5e-12
Identities = 30/47 (63%), Positives = 39/47 (82%)
Frame = +1
Query: 466 MRNRSMARYLSGSVKEILGTAQSVGCTVEGRPPHDLIDDINSGALTI 606
MR RSMA+ L G+VKEILGTAQSVGCT++G+ PHD+I+ I +G + I
Sbjct: 1 MRPRSMAKKLEGTVKEILGTAQSVGCTIDGQHPHDIIESIANGEIEI 47
>AF022976-4|AAC69083.2| 345|Caenorhabditis elegans Serpentine
receptor, class h protein37 protein.
Length = 345
Score = 28.3 bits (60), Expect = 4.9
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 542 HPTDCAVPRISFTEPERYRAIDL 474
HPT CAV F +P +Y IDL
Sbjct: 291 HPTACAVSLFLFYDPYQYYLIDL 313
>Z81042-5|CAD44090.1| 331|Caenorhabditis elegans Hypothetical
protein C27H6.4b protein.
Length = 331
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 401 SRKISNTTATSPLKM*SALRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRAGR 562
SR +S TTA S L TD+ + A KR+ A +DVLWR +
Sbjct: 94 SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 147
>Z81042-4|CAB02796.1| 272|Caenorhabditis elegans Hypothetical
protein C27H6.4a protein.
Length = 272
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/54 (35%), Positives = 25/54 (46%)
Frame = +2
Query: 401 SRKISNTTATSPLKM*SALRRS*ETDQWPGTFLAQ*KRFLAQHSQLDVLWRAGR 562
SR +S TTA S L TD+ + A KR+ A +DVLWR +
Sbjct: 35 SRSLSQTTAHSKTMSFEDLDALFGTDRVQEGYDALKKRYDAGEKSIDVLWRLAK 88
>D38541-1|BAA07544.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +1
Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 412 IKHNGNISLEDVVGIAKIMRNRSM 483
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38540-1|BAA07543.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +1
Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 412 IKHNGNISLEDVVGIAKIMRNRSM 483
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-2|BAA07541.1| 284|Caenorhabditis elegans CeTMII protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +1
Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 412 IKHNGNISLEDVVGIAKIMRNRSM 483
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>D38539-1|BAA07540.1| 284|Caenorhabditis elegans CeTMI protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +1
Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 412 IKHNGNISLEDVVGIAKIMRNRSM 483
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-4|CAC70112.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1d protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +1
Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 412 IKHNGNISLEDVVGIAKIMRNRSM 483
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AL132877-1|CAC70114.1| 284|Caenorhabditis elegans Hypothetical
protein Y105E8B.1a protein.
Length = 284
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/84 (22%), Positives = 36/84 (42%), Gaps = 3/84 (3%)
Frame = +1
Query: 241 KVGDDIAKATSDWKGLKITVQ---LTVQNRQAQIAVVPSAAALIIRALKEPPRDRKKQKN 411
+ GDD+ KA D ++ TVQ +A++A + L+ L+ K
Sbjct: 52 QTGDDLDKAQEDLSAATSKLEEKEKTVQEAEAEVASLNRRMTLLEEELERAEERLKIATE 111
Query: 412 IKHNGNISLEDVVGIAKIMRNRSM 483
++++ + K+M NRS+
Sbjct: 112 KLEEATHNVDESERVRKVMENRSL 135
>AC024785-5|AAF60596.1| 577|Caenorhabditis elegans C-type lectin
protein 73 protein.
Length = 577
Score = 27.9 bits (59), Expect = 6.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = -1
Query: 294 DLETLPVTCGLGNVITHLFRRQTKRTDFR 208
D ++LP+ C LG V+ + ++ TDFR
Sbjct: 386 DSQSLPIWCKLGKVVKYKYKVTPGWTDFR 414
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,184,441
Number of Sequences: 27780
Number of extensions: 322397
Number of successful extensions: 836
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 836
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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