Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18a21
(748 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyce... 32 0.076
SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces pomb... 30 0.40
SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|ch... 29 0.70
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 29 0.70
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 28 1.6
SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces ... 28 1.6
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 2.1
SPBC543.02c |||DNAJ/TPR domain protein DNAJC7 family|Schizosacch... 27 2.1
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 27 2.1
SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 27 2.1
SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p... 27 3.8
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch... 27 3.8
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 5.0
SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces... 26 6.6
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 26 6.6
SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated heterochr... 26 6.6
SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr 2... 26 6.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 6.6
SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces pomb... 25 8.7
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc... 25 8.7
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac... 25 8.7
>SPCC830.06 |||calcineurin regulatory subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 174
Score = 32.3 bits (70), Expect = 0.076
Identities = 20/85 (23%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Frame = +3
Query: 489 DMDEKELKAPNSEGFTYSNLQKRDRRRWTYADADQNDALNRTEFAAFLHPEDHSSMRD-- 662
D+D +E S + N +++ + + D D++ ++ E L +++R+
Sbjct: 72 DVDFQEFINSLSVFSVHGNKEEKLKFAFKIYDIDRDGYISNGELYLVLKMMVGTNLREDQ 131
Query: 663 --VVVLETLEDIDKDQDGKVSLDEY 731
+V +T+ ++DKD+DGK+S +E+
Sbjct: 132 LQQIVDKTIMEVDKDRDGKISFEEF 156
>SPAC1D4.01 ||SPAC1F3.11|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 285
Score = 29.9 bits (64), Expect = 0.40
Identities = 15/54 (27%), Positives = 27/54 (50%), Gaps = 6/54 (11%)
Frame = +3
Query: 552 KRDRRRWTYADADQNDALNRTEFAAF------LHPEDHSSMRDVVVLETLEDID 695
K++R Y++ + +ALN + LHP +HS +RD L + ++D
Sbjct: 158 KQERLAQNYSENGETNALNTKNESTVQNIKNSLHPNEHSFIRDAAALGAIREVD 211
>SPAC3A12.14 |cam1||calmodulin Cam1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 150
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 582 DADQNDALNRTEFAAFLHPEDHSSMRDVVVLETLEDIDKDQDGKVSLDE 728
DAD N ++ TEF + + + + V E + DKD +G ++++E
Sbjct: 58 DADGNGTIDFTEFLTMMARKMKDTDNEEEVREAFKVFDKDGNGYITVEE 106
Score = 26.6 bits (56), Expect = 3.8
Identities = 13/69 (18%), Positives = 33/69 (47%)
Frame = +3
Query: 261 QLSPEESKRRLGEIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERHWRQQNPNNEE 440
++ +++ + E D D +G+IT+ EL + +R E+V R+ + + +
Sbjct: 77 KMKDTDNEEEVREAFKVFDKDGNGYITVEELTHVLTSLGERLSQEEVADMIREADTDGDG 136
Query: 441 FVTWEAYRK 467
+ +E + +
Sbjct: 137 VINYEEFSR 145
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 29.1 bits (62), Expect = 0.70
Identities = 13/45 (28%), Positives = 24/45 (53%)
Frame = -2
Query: 201 DAHCDNVQHQTDDPSTSSSLHSLGLPRTPSKLPIAQRKTSTFWLL 67
D+ C+N++ T+++ SL P+TP KL I + F ++
Sbjct: 259 DSSCENIRILGFKAETNAATISLFAPKTPEKLQITLSSSDVFTII 303
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 27.9 bits (59), Expect = 1.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 156 TSSSLHSLGLPRTPSKLPIAQRKTSTF 76
+S+ H LGLP PS +P+ + +F
Sbjct: 311 SSTIRHKLGLPEVPSAMPVPNAQNESF 337
>SPBC776.17 |||rRNA processing protein Rrp7 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 254
Score = 27.9 bits (59), Expect = 1.6
Identities = 18/53 (33%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Frame = +3
Query: 195 EHHNKQFDHDAFLGEDQAKTFDQLSPEE--SKRRLGEIADKIDSDQDGFITLV 347
E +++QF + L E +++ +E KRRL A K D+DGF+T+V
Sbjct: 136 ESYDRQFVNPRVLAESVDSYMKRVTKKEIAEKRRL--FAMKNQPDEDGFVTVV 186
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 129 VPTNEETKRLMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAKTFDQLSPEESKRRLGEIAD 308
V E + R+ LSD +H F ED ++DQ SPE ++ R I+
Sbjct: 1061 VRLEELSTRVSKMLSDINEV--DHTIASLSLKLFQAEDTKNSYDQTSPEATQERNRTISS 1118
Query: 309 KI 314
K+
Sbjct: 1119 KL 1120
>SPBC543.02c |||DNAJ/TPR domain protein DNAJC7
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 476
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/92 (19%), Positives = 39/92 (42%)
Frame = +3
Query: 231 LGEDQAKTFDQLSPEESKRRLGEIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERH 410
+GE + D + K + + +I +G L E + +++ Q ++R
Sbjct: 72 IGEFELALCDAKQSDRIKPDVPKTQSRIRQAYEGLSILNEAEVYLKNKQAGLALNALDRL 131
Query: 411 WRQQNPNNEEFVTWEAYRKNVYGFMDDMDEKE 506
R+ + + ++W + VY F +DMD +
Sbjct: 132 QRRIDSTTQPPMSWMYLKAQVYIFQNDMDRAQ 163
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 27.5 bits (58), Expect = 2.1
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -2
Query: 225 RHDQTACY-DAHCDNVQHQTDDPSTSSSLHSLGLPR 121
R +Q Y D HC + H T P++ + HS L R
Sbjct: 223 RQNQYFFYLDPHCTHFAHTTTQPASEETFHSATLRR 258
>SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 432
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/58 (25%), Positives = 30/58 (51%), Gaps = 3/58 (5%)
Frame = +3
Query: 150 KRLMDHLSDAEHYRNEHHNKQFDHDAFLGEDQAK---TFDQLSPEESKRRLGEIADKI 314
+RL +HL +++ +H NK+ D + E++ K ++ PE K+ G +K+
Sbjct: 179 QRLAEHLENSKKTILQHDNKEEDKEIHSEENETKDEIKSEKKEPEIKKQEGGSSTEKV 236
>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 723
Score = 26.6 bits (56), Expect = 3.8
Identities = 19/75 (25%), Positives = 31/75 (41%)
Frame = +3
Query: 495 DEKELKAPNSEGFTYSNLQKRDRRRWTYADADQNDALNRTEFAAFLHPEDHSSMRDVVVL 674
+ + L+ N E T LQK +R +A D T LH DH R VL
Sbjct: 394 NREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVL 453
Query: 675 ETLEDIDKDQDGKVS 719
+ + + +++ +S
Sbjct: 454 KDIHAVYYEEENDIS 468
>SPBC25B2.07c |mug164||microtubule-associated
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 501
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/46 (30%), Positives = 23/46 (50%)
Frame = -2
Query: 456 PPKSRTLRY*GSAVSNVFPHPHRCIASEYSGSNLSTQREL*NHPGL 319
P +SR + + S + H H +S +S L+T +E+ N P L
Sbjct: 417 PSRSRATIHERPSSSILHRHAHSLTSSSFSTKTLATTKEIQNSPTL 462
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -2
Query: 183 VQHQTDDPSTSSSLHSLGLPRTP 115
V HQ P TS+S+ S GL +TP
Sbjct: 413 VYHQVFYPPTSTSVSSYGLGKTP 435
>SPAC29A4.05 |cam2||myosin I light chain Cam2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 143
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/59 (20%), Positives = 28/59 (47%)
Frame = +3
Query: 258 DQLSPEESKRRLGEIADKIDSDQDGFITLVELKDWIRYTQKRYIDEDVERHWRQQNPNN 434
++L ES+ + D D G+I + D+++ ++ D +V+ ++ +P N
Sbjct: 69 NKLRETESEEEYIKAFRVFDKDNSGYIETAKFADYMKTLGEKLSDNEVQLMVQEADPTN 127
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 25.8 bits (54), Expect = 6.6
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 399 VERHWRQQNPNNEEFVTWEA 458
+E HW+ P+ E+ TW+A
Sbjct: 159 IEEHWQLLCPDREKVQTWQA 178
>SPCC1739.03 |hrr1||Helicase Required for RNAi-mediated
heterochromatin assembly Hrr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1015
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/56 (21%), Positives = 23/56 (41%)
Frame = +3
Query: 450 WEAYRKNVYGFMDDMDEKELKAPNSEGFTYSNLQKRDRRRWTYADADQNDALNRTE 617
WE KN D++ E E + YSN+ D ++ + + ++T+
Sbjct: 17 WEMVNKNTEVVFDEIPEPETLSEMKRHPLYSNIFNADNNTTSFTEQIETSETSKTQ 72
>SPBC1198.05 |||guanylate kinase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 202
Score = 25.8 bits (54), Expect = 6.6
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 435 EEFVTWEAYRKNVYGFMDDMDEKELKAPNSEGFTYSNLQ 551
E+FV W + N+YG M +EL+A N + +LQ
Sbjct: 82 EKFVEWAVFSGNMYG-TSIMAIQELEAVNKKAILDIDLQ 119
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/47 (25%), Positives = 23/47 (48%)
Frame = +3
Query: 546 LQKRDRRRWTYADADQNDALNRTEFAAFLHPEDHSSMRDVVVLETLE 686
L R + RW Y + +N+T F+ P+D S + ++ T++
Sbjct: 925 LSDRKKLRW-YKKFYLGELINKTRHCTFIEPQDKSLVTPQLLCATVD 970
>SPBC14C8.01c |cut2|SPBC1815.02c|securin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 301
Score = 25.4 bits (53), Expect = 8.7
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 492 MDEKELKAPNSEGFTYSNLQKRDRR 566
MD + PNS+G + S +Q+R +R
Sbjct: 81 MDSPTILEPNSQGISRSAVQERSKR 105
>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 329
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = +1
Query: 163 IICLMLNIIAMSIITSSLIMTPFW--ERTRPKLS 258
+IC I A+ ++ S + PFW ERT KL+
Sbjct: 193 LICSTCTISAVLLLIVSSVCIPFWTFERTLAKLA 226
>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 142 SFVGTPANTIEIANSTKKDLNILATWKPPRQQSHVN 35
S + PANT+E+ N + D N L+ R+ S +N
Sbjct: 507 SMINEPANTLELENDS--DDNALSNSNGKRKWSEIN 540
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,235,112
Number of Sequences: 5004
Number of extensions: 72050
Number of successful extensions: 291
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 275
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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