Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18a17
(494 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch... 159 2e-40
SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein L32|Schizosac... 157 6e-40
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 31 0.072
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr... 30 0.22
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa... 26 2.7
SPAC1250.04c |atl1||alkyltransferase-like protein Atl1|Schizosac... 26 3.6
SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein... 25 4.7
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 25 6.3
SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces p... 25 6.3
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S... 25 6.3
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 25 6.3
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr... 25 8.3
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||... 25 8.3
>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 1|||Manual
Length = 127
Score = 159 bits (387), Expect = 2e-40
Identities = 72/122 (59%), Positives = 96/122 (78%)
Frame = +2
Query: 95 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 274
I+KKRTK F RHQSDR+ ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IIKKRTKPFKRHQSDRFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 275 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 454
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RS
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVSARKRVEIVEKARALGVKVTNAGAKVRS 125
Query: 455 QE 460
QE
Sbjct: 126 QE 127
>SPBC16C6.11 |rpl3201|rpl32-1|60S ribosomal protein
L32|Schizosaccharomyces pombe|chr 2|||Manual
Length = 127
Score = 157 bits (382), Expect = 6e-40
Identities = 72/122 (59%), Positives = 95/122 (77%)
Frame = +2
Query: 95 IVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLP 274
IVKKRTK F RHQSD + ++ +WRKPRGID+ VRRRF+G MP IGYG+NKKTR+ +P
Sbjct: 6 IVKKRTKPFKRHQSDLFKRVGESWRKPRGIDSCVRRRFRGTISMPKIGYGNNKKTRYCMP 65
Query: 275 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKLIVERAQQLSIRVTNAAARLRS 454
NG + LV NV ++E+L+M N+ Y AEIA VS++KR IVE+A+ L ++VTNA A++RS
Sbjct: 66 NGLKAFLVRNVSDVELLLMHNKTYAAEIASNVSARKRVEIVEKARALGVKVTNAGAKVRS 125
Query: 455 QE 460
QE
Sbjct: 126 QE 127
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 31.5 bits (68), Expect = 0.072
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Frame = -2
Query: 310 FNIVN*DLTESIWEHMTGLLVGTVTNVGHQVLTLEPPADSVVNTSRF-TPIPLKFV--IA 140
F+I + D+ ++ H+ G+ T G + +T DS + + TP+P+KFV IA
Sbjct: 381 FDIRSPDIVQAYDHHLGGINSITFLENGKRFVTTSD--DSSMRFWEYGTPVPIKFVADIA 438
Query: 139 IRLMPDKSLRP 107
+ MP +LRP
Sbjct: 439 MHSMPRVALRP 449
>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
2|||Manual
Length = 511
Score = 29.9 bits (64), Expect = 0.22
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = -2
Query: 463 VLLGAEASGRIRHSDAELLGSFHDQLPLLRRDTVSDLCAVL 341
VL ++ R+ HSD + + +F DQ +RR + LC +L
Sbjct: 139 VLKNSKQISRLIHSDVQNISNFFDQNFGIRRSNIYQLCLLL 179
>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
Nup132|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1162
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/66 (16%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +2
Query: 275 NGFRKVLVHNVKELEILMMQNRKYCAEIAHGVSSKKRKL--IVERAQQLSIRVTNAAARL 448
N R+ +HN++ ++ L+ Q ++C + V ++ ++ A ++ + + ++A
Sbjct: 595 NALREWFLHNIESIDQLIAQAHEFCIDSGSRVQELPLEVLDVIMEANEVILAIQSSALAY 654
Query: 449 RSQENE 466
R + +
Sbjct: 655 RRESQK 660
>SPAC1250.04c |atl1||alkyltransferase-like protein
Atl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 25.8 bits (54), Expect = 3.6
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 46 SKRNIQDGYKTCLQADNRQKEDEEIYQASIG 138
SKR+I G + Q D ++E EIYQ S+G
Sbjct: 67 SKRDISAGEQR--QKDRLEEEGVEIYQTSLG 95
>SPCC1795.01c |mad3|SPCC895.02|mitotic spindle checkpoint protein
Mad3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 310
Score = 25.4 bits (53), Expect = 4.7
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = +1
Query: 208 QGSILDAQHWLRFQQEDPSYAPKWIP*GPSS 300
+G + A+ +LRFQQ+ + +W+ P S
Sbjct: 175 KGKRMKAKPFLRFQQKYQQFTHRWLEFAPQS 205
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 55 NIQDGYKTCLQADNRQKEDEEIYQASIGS 141
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPBC21C3.20c |git1||C2 domain protein Git1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1098
Score = 25.0 bits (52), Expect = 6.3
Identities = 14/42 (33%), Positives = 20/42 (47%)
Frame = +2
Query: 119 FIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNIGYG 244
F H D YD+L NW++ ++ +RFK NI G
Sbjct: 822 FCVHTRDVYDELVPNWKETYQMEITNVKRFKLIIYQRNIHTG 863
>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
Atm1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 693
Score = 25.0 bits (52), Expect = 6.3
Identities = 17/61 (27%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Frame = +2
Query: 134 SDRYDKLKRN-WRKPRGIDNRVRRRFKGQYLMPNIGYGSNKKTRHMLPNGFRKVLVHNVK 310
+ R D++ N RK G+ + F L NIGYG+ K + + +K +H++
Sbjct: 504 NQRLDQITLNSLRKAIGVVPQDTPLFNDTILY-NIGYGNPKASNDEIVEAAKKAKIHDII 562
Query: 311 E 313
E
Sbjct: 563 E 563
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 25.0 bits (52), Expect = 6.3
Identities = 9/29 (31%), Positives = 15/29 (51%)
Frame = +1
Query: 55 NIQDGYKTCLQADNRQKEDEEIYQASIGS 141
NI DGY + D K+D + + +G+
Sbjct: 95 NIDDGYLNLMTTDGTTKDDVRLPEGELGN 123
>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 24.6 bits (51), Expect = 8.3
Identities = 16/50 (32%), Positives = 23/50 (46%)
Frame = +2
Query: 86 RPTIVKKRTKRFIRHQSDRYDKLKRNWRKPRGIDNRVRRRFKGQYLMPNI 235
R T VK+R K I+ S+ + KP G R R+ K Y +P +
Sbjct: 540 RETKVKRRRKARIQETSEESTVVNEPNEKPDGRSRRERK--KVNYALPGL 587
>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 948
Score = 24.6 bits (51), Expect = 8.3
Identities = 8/29 (27%), Positives = 14/29 (48%)
Frame = +2
Query: 347 CAEIAHGVSSKKRKLIVERAQQLSIRVTN 433
C + HGV + K ++ER + +N
Sbjct: 135 CQPVRHGVVDSETKFVIERKDSFTFLASN 163
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,185
Number of Sequences: 5004
Number of extensions: 38300
Number of successful extensions: 116
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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