Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18a10
         (637 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr ...    30   0.24 
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    29   0.74 
SPCC965.04c |||mitochondrial inner membrane i-AAA protease compl...    29   0.74 
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    29   0.74 
SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9 |Sch...    28   0.98 
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   1.3  
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    27   2.3  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   2.3  
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa...    27   3.0  
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|...    27   3.0  
SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyce...    26   4.0  
SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces ...    26   4.0  
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    25   6.9  
SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyce...    25   9.1  
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom...    25   9.1  
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po...    25   9.1  
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo...    25   9.1  
SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation fac...    25   9.1  

>SPAC17G6.02c |||RTA1-like protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 324

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 14/36 (38%), Positives = 22/36 (61%)
 Frame = +1

Query: 1   WDDLFMEEIVPLVVSAASAIPSLVDAFSSSKPPQTD 108
           W D+F  + +P++ ++A  IPSL  A   SK P T+
Sbjct: 239 WFDIF--DFIPMIFTSALLIPSLYPALERSKLPFTE 272


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 17/37 (45%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
 Frame = +2

Query: 533 PSPAISATSTRSSN---PRFHTPTTPDLTSISINPLT 634
           P P+IS T+T SS       H PTTPD     + PLT
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPD--HFKLTPLT 307


>SPCC965.04c |||mitochondrial inner membrane i-AAA protease complex
           subunit Yme1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 709

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +1

Query: 43  SAASAIPSLVDAFSSSKPPQTDTPP 117
           S  S+ PSL  +  +S PP T TPP
Sbjct: 158 STVSSTPSLNHSLQNSMPPSTPTPP 182


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 28/76 (36%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
 Frame = +1

Query: 274 TGTETKSNSVTV-QSLPNVS--SIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTA 444
           TG       +T+ QSL N+S  S I   R     N  A  FPS  S  +P  VDL     
Sbjct: 308 TGVSLSRPRLTLDQSLGNLSLGSGINQRRQVPRSNSYAGAFPSVVSASLPTKVDLN-HQM 366

Query: 445 DVTVEGGNVLATPSSS 492
           DV+ E    L+TP  S
Sbjct: 367 DVSDEEQRFLSTPLGS 382


>SPAC1834.05 |alg9||mannosyltransferase complex subunit Alg9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 577

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 17/41 (41%), Positives = 23/41 (56%)
 Frame = +2

Query: 227 LLNV*SSLFNACTSILPAPKPNRTVSLCNHYQTSPPS*KAT 349
           +L V S +++A TS LP+      V+L    Q SPPS K T
Sbjct: 131 VLFVNSGMWSASTSFLPSSFAMNMVTLALSAQLSPPSTKRT 171


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 23/111 (20%), Positives = 41/111 (36%), Gaps = 4/111 (3%)
 Frame = +1

Query: 274 TGTETKSNSVTVQSLPNVSSIIKGYRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVT 453
           T T   S  +T  +    +S+   Y    + +    +  S P    PVT   C T+  V 
Sbjct: 482 TSTPVTSTPLTTTNCTTSTSV--PYTSTPVTSSNYTISSSTPVTSTPVTTTNCTTSTSVL 539

Query: 454 VEGGNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 594
                V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 540 YTSTPVTSTPLATTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 590



 Score = 27.1 bits (57), Expect = 2.3
 Identities = 22/109 (20%), Positives = 41/109 (37%), Gaps = 6/109 (5%)
 Frame = +1

Query: 286 TKSNSVTVQSLPNVSSIIKG--YRDAYLVNLEAVVFPSAPSLKIPVTVDLCWTTADVTVE 459
           T +N  T  S+P  S+ +              +V + S P    P+T   C T+  +   
Sbjct: 423 TTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTSVPYTSTPVTSTPLTTTNCTTSTSIPYT 482

Query: 460 GGNVLATPSSSRITIGGLALMHQATLPCDLGYI----NPIIKSPIPYTN 594
              V +TP ++       ++ + +T      Y      P+  +P+  TN
Sbjct: 483 STPVTSTPLTTTNCTTSTSVPYTSTPVTSSNYTISSSTPVTSTPVTTTN 531



 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +2

Query: 530 PPSPAISATSTRSSNPRFHTPTTPDLTSISINP 628
           PP PA ++++  SS+P   T +T   TS SI P
Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPP 401


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3699

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +1

Query: 256  RLYFDLTGTETKSNSVTVQSLPNVSSIIKGYRD-AYLVN 369
            R+Y  L  T   ++S    + PN S + +GY + A+L+N
Sbjct: 2840 RVYLPLVPTIQANSSADSSNPPNTSFLFRGYHETAWLIN 2878


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = +2

Query: 536 SPAISATSTRSSNPRFHTPTTPDLTSIS 619
           S  IS +ST   N  FH PT    TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828


>SPBC1289.12 |usp109||U1 snRNP-associated protein
           Usp109|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 352

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +2

Query: 527 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTP 637
           +PPS A+  +   +  P    P  P +  +  NP TP
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTP 281


>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1036

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 16/30 (53%), Positives = 21/30 (70%)
 Frame = +1

Query: 337 IKGYRDAYLVNLEAVVFPSAPSLKIPVTVD 426
           +K  RD YL NLEA  FPS+  +KI +T+D
Sbjct: 378 LKTRRDQYLTNLEA--FPSSLFMKI-LTLD 404


>SPCC330.04c |mug135||DUF1773 family protein 3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 97  GVWKKRKHRPRREWPKRQKRLKAQF 23
           G WKK +   + EW K ++  KA++
Sbjct: 119 GEWKKAREEDKAEWKKAREEDKAEW 143



 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 118 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 23
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 123 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 154



 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 118 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 23
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 134 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 165



 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/32 (28%), Positives = 18/32 (56%)
 Frame = -1

Query: 118 QAGYQSEGVWKKRKHRPRREWPKRQKRLKAQF 23
           +A  + +  WKK +   + EW K ++  KA++
Sbjct: 145 KAREEDKAEWKKAREEDKAEWKKAREEDKAEW 176


>SPBC106.08c |mug2||DUF1773 family protein 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 296

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +1

Query: 49  ASAIPSLVDAFSSSKPPQTDTPPARSMD 132
           A+  P++V  F +   PQ D PP R+++
Sbjct: 211 ATGYPAIVVPFLNGSLPQADLPPLRTIE 238


>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 517 LMHQATLPCDLGYINPIIKSPIPYTNHP 600
           + HQA L C  GY + +    +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375


>SPBP4H10.09 |rsv1||transcription factor Rsv1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 428

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +1

Query: 37  VVSAASAIPSLVDAFSSSKPPQTDTPPARS 126
           V  ++S +P     F SSKP   + PPA S
Sbjct: 312 VSPSSSFVPMYPTTFPSSKPQIVNAPPAPS 341


>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 566

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = -3

Query: 506 PIVMREDEGVASTLPPSTVTSAVVQQRSTVTGILRLGAEGKTTAS 372
           P  ++E   +  TL  +T+T   V   + +  +L++ AEGK TAS
Sbjct: 507 PEEIKERIAIPKTLI-ATITLPDVSPNAKIELVLQIDAEGKLTAS 550


>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 646

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 225 VSSTFDHPFSTPVLRSYRHRNQIEQ 299
           V  TFD P S P+L S +    +EQ
Sbjct: 200 VQQTFDIPMSKPILVSSKTGKNVEQ 224


>SPBC32C12.02 |ste11|aff1, stex|transcription factor
           Ste11|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +2

Query: 536 SPAISATSTRSS-NPRFHTPTTPDLTSISINPLTP 637
           SP +SA    S  +P    P+TP   + SI+P TP
Sbjct: 284 SPELSADKVLSHCSPIDARPSTPSCPNASISPKTP 318


>SPBC1709.15c |cft2||cleavage factor two Cft2/polyadenylation factor
           CPSF-73 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 797

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 4/38 (10%)
 Frame = +2

Query: 233 NV*SSLFNACTSILPAPKPNRTVSLC----NHYQTSPP 334
           +V SSL    T +LP    +R + LC    NH+  S P
Sbjct: 214 SVMSSLLKGGTVLLPVDAASRVLELCCILDNHWSASQP 251


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,482
Number of Sequences: 5004
Number of extensions: 44540
Number of successful extensions: 212
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 283719918
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)