Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18a06
         (648 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.07c |rpn2||19S proteasome regulatory subunit Rpn2|Schi...   130   2e-31
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    27   1.8  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    27   1.8  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    27   2.3  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      27   3.1  
SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.1  
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    25   9.4  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   9.4  

>SPBC17D11.07c |rpn2||19S proteasome regulatory subunit
           Rpn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 965

 Score =  130 bits (313), Expect = 2e-31
 Identities = 60/161 (37%), Positives = 97/161 (60%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSA G+++LLDE   E++  AL ++   +D+ WP           ++ED  F + +LAA
Sbjct: 12  ITSAGGLMALLDEQERELQVHALLKIYEFIDQLWPEISDDVTKIEVMYEDHSFPERELAA 71

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKRKALFVDSSA 471
           LV SKVYY+LG ++++L +AL +G  F  +  ++Y +T I K ID +  K   L+ +  A
Sbjct: 72  LVVSKVYYYLGEYDEALLFALSSGPKFLHDKNSDYKETLIFKCIDMFIHKSAELYKNPKA 131

Query: 472 ELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFE 594
           + +D RL  +V  +FQ+C    ++R  LG+A+E  R+DI E
Sbjct: 132 DPLDERLSGVVEGIFQKCYAKNEWRHVLGIAIEAHRLDIIE 172


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = -1

Query: 237  LDRFRYFWPKLIDDVVQPLQSEFFNFRHGLIEQGNNPRGR 118
            LD F + W K++DD+ + +  E  + R  +      PRG+
Sbjct: 1195 LDAFEHAWNKVMDDIQREMLEEEQSSRDFVNRTKKKPRGK 1234


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 18/57 (31%), Positives = 33/57 (57%)
 Frame = -1

Query: 570 LQC*AKRLSVLSIFKAPLEHAIHDVFKTVIN*FSRTIHKESLSLLSVKVDRFCDRSV 400
           ++C  K L+++ + KAPL      V+K + +  SR   KES++L++   + F  R+V
Sbjct: 1   MKCSNKVLTIIKLLKAPLAECDPTVYKILESEKSR--QKESIALIA--SENFTSRAV 53


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +1

Query: 352 LGAGDLFDVNARNEYVDTTIAKAIDFYTQK 441
           +G G   D +A+  YVDT    A++  TQ+
Sbjct: 280 IGCGRYHDAHAKQHYVDTAHCYAMELETQR 309


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 112 CSFFFVILFNLFKMGSLSFYYNFSFK 35
           C FF+  LF+ F     S ++NF F+
Sbjct: 109 CFFFYFSLFSFFSFLFTSLHFNFFFR 134


>SPAC1805.10 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 527

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
 Frame = +2

Query: 41  RKVVIKR----QRTHFK*VK*NNEEK*TSRLPRGLFPCSMSPCLK 163
           +KV+IKR    +  H   V  NN+EK T  L   +F   M PC K
Sbjct: 109 QKVLIKRPEGCRELHSCNVLMNNDEKNTLSLTPSIFLSVMKPCPK 153


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 426 VDRFCDRSVDIFVSRVHVEKISSPERVC 343
           V   C R  DI +   +++ ISSP  +C
Sbjct: 24  VVELCQRVRDILIEESNIQWISSPVTIC 51


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 10/14 (71%), Positives = 10/14 (71%)
 Frame = -1

Query: 42  LLNHCTLITNHKTF 1
           LL  C LITNH TF
Sbjct: 440 LLEKCLLITNHATF 453


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,538,181
Number of Sequences: 5004
Number of extensions: 51013
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)