Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18a06
(648 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_01_0783 + 7585326-7585477,7586420-7586589,7586687-7586801,758... 165 3e-41
04_04_1094 - 30832987-30833316,30833530-30834273,30834484-308347... 95 6e-20
11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634 31 1.0
04_04_1096 + 30855192-30855225,30856135-30856208,30856293-308564... 28 5.6
02_02_0017 - 6131265-6131284,6131654-6131774,6132011-6132146,613... 28 7.4
02_02_0016 - 6118739-6118758,6119116-6119236,6119478-6119613,611... 28 7.4
05_01_0386 + 3023552-3024944,3025639-3025701,3026274-3026355,302... 27 9.7
>08_01_0783 +
7585326-7585477,7586420-7586589,7586687-7586801,
7586887-7587055,7587185-7587319,7587409-7587728,
7587992-7588127,7588224-7588472,7588567-7588787,
7588906-7589164,7589264-7589971,7590095-7590424
Length = 987
Score = 165 bits (401), Expect = 3e-41
Identities = 82/179 (45%), Positives = 121/179 (67%), Gaps = 2/179 (1%)
Frame = +1
Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
++SA+G++++L EP +E+K AL L+++V FWP L+ED+ F Q QLAA
Sbjct: 8 VSSASGLLAMLQEPAAELKLHALANLNSLVHVFWPEISTSVPAIESLYEDEEFDQRQLAA 67
Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKR-KAL-FVDS 465
LV SKV+Y+LG +DSL+YALGAG LFD + ++Y T +AKA+D Y R K+L
Sbjct: 68 LVVSKVFYYLGELDDSLSYALGAGPLFDPSEGSDYAQTLLAKALDEYASIRSKSLKAAGE 127
Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
E +D RLE IV RM +C+ DG+Y+QA+G++LE +R+D EE+I +SD++ G L Y+
Sbjct: 128 GDEKMDPRLEAIVERMLDKCILDGKYQQAMGMSLECKRLDKLEEAISRSDNLNGSLSYS 186
>04_04_1094 -
30832987-30833316,30833530-30834273,30834484-30834742,
30834821-30835041,30835127-30835375,30835460-30835595,
30835864-30836207,30836589-30836758,30837080-30837185,
30837267-30837330,30838462-30838616
Length = 925
Score = 94.7 bits (225), Expect = 6e-20
Identities = 46/117 (39%), Positives = 72/117 (61%)
Frame = +1
Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
++SA+GI+++L EP E+K AL L+++V F+P L+ED+ F Q QLAA
Sbjct: 9 VSSASGILAMLQEPAEELKLHALASLNSVVHLFYPEISTSIPTIESLYEDEDFEQRQLAA 68
Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQKRKALFVD 462
LV SKV+Y+LG D+L+YALGAG LFD++ ++Y + + Q+ + V+
Sbjct: 69 LVVSKVFYYLGELNDALSYALGAGPLFDISEDSDYAHALLGVFLTVQYQQAMGMGVE 125
Score = 39.9 bits (89), Expect = 0.002
Identities = 16/34 (47%), Positives = 25/34 (73%)
Frame = +1
Query: 538 QYRQALGLALETRRMDIFEESIMKSDDIPGMLQY 639
QY+QA+G+ +E RR+D E +I++ D+I G L Y
Sbjct: 115 QYQQAMGMGVECRRLDKLESAIVRCDNIHGALSY 148
>11_03_0052 + 9330778-9330816,9330963-9331174,9331498-9333634
Length = 795
Score = 30.7 bits (66), Expect = 1.0
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Frame = +3
Query: 498 HRESHVPEVP*RWT---IQTSAWLSIGDAPYGY 587
H+E + P WT + +AW +IGDAP G+
Sbjct: 62 HKEFKIEHTPGAWTSSITEVAAWDNIGDAPVGF 94
>04_04_1096 +
30855192-30855225,30856135-30856208,30856293-30856467,
30856842-30856918,30857042-30857279,30857414-30857478,
30857628-30858086,30858253-30858465,30858613-30859002
Length = 574
Score = 28.3 bits (60), Expect = 5.6
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 385 RNEYVDTTIAKAIDFYTQKRKAL 453
+N V+TTI + DFY Q+ KA+
Sbjct: 459 KNHEVETTILEDFDFYEQREKAM 481
>02_02_0017 -
6131265-6131284,6131654-6131774,6132011-6132146,
6132423-6132529,6133006-6133099,6133199-6133395,
6134401-6134472,6135128-6135304,6135393-6135467,
6135557-6135697,6136439-6136627,6136969-6137034,
6137118-6137268,6137596-6137664,6138751-6138899,
6138969-6139100,6139198-6139523,6139599-6139635,
6139765-6139803,6140196-6140250,6140363-6140424,
6140512-6140532,6140820-6140822
Length = 812
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 532 DGQYRQALGLALETRRMDIFEESIMKSDDIPGML 633
+ ++RQ LA+ T ++D+ EE ++ + D+ G+L
Sbjct: 573 ESKWRQLGELAMSTGKLDMAEECLLHAMDLSGLL 606
>02_02_0016 -
6118739-6118758,6119116-6119236,6119478-6119613,
6119887-6119993,6120316-6120409,6120509-6120705,
6121872-6121943,6122597-6122773,6122862-6122936,
6123027-6123167,6123837-6124025,6124415-6124480,
6124564-6124714,6125040-6125200,6126279-6126410,
6126508-6126833,6126906-6126942,6127056-6127088,
6127500-6127554,6127666-6127753,6127817-6127862
Length = 807
Score = 27.9 bits (59), Expect = 7.4
Identities = 11/34 (32%), Positives = 23/34 (67%)
Frame = +1
Query: 532 DGQYRQALGLALETRRMDIFEESIMKSDDIPGML 633
+ ++RQ LA+ T ++D+ EE ++ + D+ G+L
Sbjct: 568 ESKWRQLGELAMSTGKLDMAEECLLHAMDLSGLL 601
>05_01_0386 +
3023552-3024944,3025639-3025701,3026274-3026355,
3026671-3026798,3027192-3027205
Length = 559
Score = 27.5 bits (58), Expect = 9.7
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
Frame = +1
Query: 397 VDTTIAKAI-DFYTQKRKALFVDSSAELIDHRL-EDIV--NRMFQRCLEDGQYRQALGL 561
VD + + D YT+ K +D + +L L DIV N M CL GQ +ALGL
Sbjct: 156 VDAVVENGVLDMYTRCGK---IDYARKLFGVMLVRDIVAWNSMMAGCLRSGQAEEALGL 211
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,700,924
Number of Sequences: 37544
Number of extensions: 307612
Number of successful extensions: 819
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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