SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18a06
         (648 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC114434-1|AAI14435.1|  953|Homo sapiens proteasome 26S non-ATPa...   213   6e-55
BC112344-1|AAI12345.1|  953|Homo sapiens proteasome (prosome, ma...   213   6e-55
BC094720-1|AAH94720.1|  953|Homo sapiens proteasome (prosome, ma...   213   6e-55
BC073833-1|AAH73833.1|  865|Homo sapiens PSMD1 protein protein.       213   6e-55
BC064398-1|AAH64398.1|  814|Homo sapiens PSMD1 protein protein.       213   6e-55
BC047897-1|AAH47897.1|  844|Homo sapiens PSMD1 protein protein.       213   6e-55
BC039845-1|AAH39845.1|  825|Homo sapiens Similar to proteasome (...   213   6e-55
BC032445-1|AAH32445.1|  824|Homo sapiens PSMD1 protein protein.       213   6e-55
BC020223-1|AAH20223.1|  856|Homo sapiens Unknown (protein for IM...   213   6e-55
BC014013-1|AAH14013.1|  848|Homo sapiens PSMD1 protein protein.       213   6e-55
BC001053-1|AAH01053.1|  869|Homo sapiens PSMD1 protein protein.       213   6e-55
AC009407-1|AAX93127.1|  953|Homo sapiens unknown protein.             213   6e-55
D44466-1|BAA07918.1|  953|Homo sapiens proteasome subunit p112 p...   209   6e-54
BC007216-1|AAH07216.1|  333|Homo sapiens C5orf4 protein protein.       30   8.2  
BC004506-1|AAH04506.2|  299|Homo sapiens C5orf4 protein protein.       30   8.2  

>BC114434-1|AAI14435.1|  953|Homo sapiens proteasome 26S non-ATPase
           subunit 1 protein.
          Length = 953

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC112344-1|AAI12345.1|  953|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 1 protein.
          Length = 953

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC094720-1|AAH94720.1|  953|Homo sapiens proteasome (prosome,
           macropain) 26S subunit, non-ATPase, 1 protein.
          Length = 953

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC073833-1|AAH73833.1|  865|Homo sapiens PSMD1 protein protein.
          Length = 865

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC064398-1|AAH64398.1|  814|Homo sapiens PSMD1 protein protein.
          Length = 814

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC047897-1|AAH47897.1|  844|Homo sapiens PSMD1 protein protein.
          Length = 844

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC039845-1|AAH39845.1|  825|Homo sapiens Similar to proteasome
           (prosome, macropain) 26S subunit, non-ATPase, 1 protein.
          Length = 825

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC032445-1|AAH32445.1|  824|Homo sapiens PSMD1 protein protein.
          Length = 824

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC020223-1|AAH20223.1|  856|Homo sapiens Unknown (protein for
           IMAGE:5087823) protein.
          Length = 856

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC014013-1|AAH14013.1|  848|Homo sapiens PSMD1 protein protein.
          Length = 848

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC001053-1|AAH01053.1|  869|Homo sapiens PSMD1 protein protein.
          Length = 869

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>AC009407-1|AAX93127.1|  953|Homo sapiens unknown protein.
          Length = 953

 Score =  213 bits (519), Expect = 6e-55
 Identities = 103/179 (57%), Positives = 136/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGAGDLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGAGDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>D44466-1|BAA07918.1|  953|Homo sapiens proteasome subunit p112
           protein.
          Length = 953

 Score =  209 bits (511), Expect = 6e-54
 Identities = 102/179 (56%), Positives = 135/179 (75%), Gaps = 2/179 (1%)
 Frame = +1

Query: 112 ITSAAGIISLLDEPMSEVKEFALKRLDNIVDEFWPXXXXXXXXXXXLHEDKIFSQHQLAA 291
           ITSAAGIISLLDE   ++KEFAL +L+ +V++FW            L+ED+ F   Q AA
Sbjct: 2   ITSAAGIISLLDEDEPQLKEFALHKLNAVVNDFWAEISESVDKIEVLYEDEGFRSRQFAA 61

Query: 292 LVASKVYYHLGAFEDSLTYALGAGDLFDVNARNEYVDTTIAKAIDFYTQK--RKALFVDS 465
           LVASKV+YHLGAFE+SL YALGA DLF+VN  +EYV+T IAK ID YT++    A   + 
Sbjct: 62  LVASKVFYHLGAFEESLNYALGARDLFNVNDNSEYVETIIAKCIDHYTKQCVENADLPEG 121

Query: 466 SAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESIMKSDDIPGMLQYA 642
             + ID RLE IVN+MFQRCL+D +Y+QA+G+ALETRR+D+FE++I++S+D+PGML Y+
Sbjct: 122 EKKPIDQRLEGIVNKMFQRCLDDHKYKQAIGIALETRRLDVFEKTILESNDVPGMLAYS 180


>BC007216-1|AAH07216.1|  333|Homo sapiens C5orf4 protein protein.
          Length = 333

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = -1

Query: 645 ESVLKHSWYIIRFHNRFLENIHTARLQC*AKRLSVLSIFKAPLEHAIHDVFKTVIN*FSR 466
           E VL +  + +  H  F + IH    +  A  + V+S++  P+EHA+ ++   ++     
Sbjct: 182 EEVLFYYSHRLLHHPTFYKKIHKKHHEWTAP-IGVISLYAHPIEHAVSNMLPVIVGPLVM 240

Query: 465 TIHKESLSL 439
             H  S+++
Sbjct: 241 GSHLSSITM 249


>BC004506-1|AAH04506.2|  299|Homo sapiens C5orf4 protein protein.
          Length = 299

 Score = 29.9 bits (64), Expect = 8.2
 Identities = 16/69 (23%), Positives = 34/69 (49%)
 Frame = -1

Query: 645 ESVLKHSWYIIRFHNRFLENIHTARLQC*AKRLSVLSIFKAPLEHAIHDVFKTVIN*FSR 466
           E VL +  + +  H  F + IH    +  A  + V+S++  P+EHA+ ++   ++     
Sbjct: 148 EEVLFYYSHRLLHHPTFYKKIHKKHHEWTAP-IGVISLYAHPIEHAVSNMLPVIVGPLVM 206

Query: 465 TIHKESLSL 439
             H  S+++
Sbjct: 207 GSHLSSITM 215


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,218,113
Number of Sequences: 237096
Number of extensions: 1634180
Number of successful extensions: 3808
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 3703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3795
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7197658880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -