Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc18a06
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-7|AAM81115.1|  668|Caenorhabditis elegans Proteasome regu...    54   7e-08
U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome regu...    54   7e-08
Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical pr...    29   2.1  
S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.       27   8.7  
M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protei...    27   8.7  
AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer :...    27   8.7  

>U39851-7|AAM81115.1|  668|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 2, isoform a
           protein.
          Length = 668

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
 Frame = +1

Query: 115 TSAAGIISLLDEPMSEV--KEFALKRLDN--IVDEFWPXXXXXXXXXXXLHEDKIFSQHQ 282
           ++AA  I +L+ P S V  K   LK  ++  ++   W            L ++  F +H 
Sbjct: 16  SNAAAFIRVLESPKSAVTDKVLVLKAFNDWDVLVNTWFEVADALPAVEQLLDNNTFPEHS 75

Query: 283 LAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARN-------EYVDTTIAKAIDFYTQK 441
            AAL+ SKVY+ L  +E +L +AL  GD   V A         EYV+  I  AID Y   
Sbjct: 76  SAALLVSKVYFCLEQYERALEFAL-RGDFNVVPATRTGLGNDAEYVNKIIETAIDTY--- 131

Query: 442 RKALFVDSSAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESI 603
            K L    S   I  +L D+++R+  R L+  +    + L  ET  + + + +I
Sbjct: 132 -KTLSKQGSG--IPQKLRDLIDRIVARNLDKREIWFVISLGFETTNLAMIDRAI 182


>U39851-6|AAM81116.1|  965|Caenorhabditis elegans Proteasome
           regulatory particle,non-atpase-like protein 2, isoform b
           protein.
          Length = 965

 Score = 54.4 bits (125), Expect = 7e-08
 Identities = 51/174 (29%), Positives = 80/174 (45%), Gaps = 11/174 (6%)
 Frame = +1

Query: 115 TSAAGIISLLDEPMSEV--KEFALKRLDN--IVDEFWPXXXXXXXXXXXLHEDKIFSQHQ 282
           ++AA  I +L+ P S V  K   LK  ++  ++   W            L ++  F +H 
Sbjct: 16  SNAAAFIRVLESPKSAVTDKVLVLKAFNDWDVLVNTWFEVADALPAVEQLLDNNTFPEHS 75

Query: 283 LAALVASKVYYHLGAFEDSLTYALGAGDLFDVNARN-------EYVDTTIAKAIDFYTQK 441
            AAL+ SKVY+ L  +E +L +AL  GD   V A         EYV+  I  AID Y   
Sbjct: 76  SAALLVSKVYFCLEQYERALEFAL-RGDFNVVPATRTGLGNDAEYVNKIIETAIDTY--- 131

Query: 442 RKALFVDSSAELIDHRLEDIVNRMFQRCLEDGQYRQALGLALETRRMDIFEESI 603
            K L    S   I  +L D+++R+  R L+  +    + L  ET  + + + +I
Sbjct: 132 -KTLSKQGSG--IPQKLRDLIDRIVARNLDKREIWFVISLGFETTNLAMIDRAI 182


>Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.6 protein.
          Length = 316

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 130 SPRQT*CSFFFVILFNLF 77
           +PR+T CS FF I+F+LF
Sbjct: 224 APRETICSLFFYIIFDLF 241


>S42187-1|AAB22845.1| 1475|Caenorhabditis elegans pTra2A protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 100  RKMNITSAAGIISLLDEPMSEVKEFALKR 186
            R  N+     + S LDEP  E+ EF++KR
Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138


>M91371-1|AAA28150.1| 1475|Caenorhabditis elegans membrane protein
            protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 100  RKMNITSAAGIISLLDEPMSEVKEFALKR 186
            R  N+     + S LDEP  E+ EF++KR
Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138


>AC006608-1|AAF39755.1| 1475|Caenorhabditis elegans Transformer : xx
            animals transformedinto males protein 2, isoform a
            protein.
          Length = 1475

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 100  RKMNITSAAGIISLLDEPMSEVKEFALKR 186
            R  N+     + S LDEP  E+ EF++KR
Sbjct: 1110 RVYNLVQKQRLASSLDEPQVELDEFSIKR 1138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,868,615
Number of Sequences: 27780
Number of extensions: 282448
Number of successful extensions: 816
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 816
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)