Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc18a05
(479 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III s... 117 1e-27
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc... 27 1.5
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma... 27 1.9
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 26 2.6
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 26 3.4
SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon... 26 3.4
SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 4.5
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 4.5
SPAC6F6.12 |||autophagy associated protein Atg24|Schizosaccharom... 25 5.9
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 25 7.8
>SPAC1B3.12c |rpb10||DNA-directed RNA polymerase I, II, and III
subunit Rpb10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 71
Score = 117 bits (281), Expect = 1e-27
Identities = 51/67 (76%), Positives = 59/67 (88%)
Frame = +3
Query: 219 MIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALDVLGLKRYCCRRMLLGHVDLIEKLL 398
MIIP+RCF+CGKVIG+KW+ YL LLQ D TEG+ALD LGL+RYCCRRM+L HVDLIEKLL
Sbjct: 1 MIIPIRCFSCGKVIGDKWDTYLTLLQEDNTEGEALDKLGLQRYCCRRMILTHVDLIEKLL 60
Query: 399 NYSPLEK 419
Y+PL K
Sbjct: 61 CYNPLSK 67
>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 529
Score = 27.1 bits (57), Expect = 1.5
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 325 SKASPSV*SACSRPK*ASHLFPITFPHVKHRTGI 224
S +SPS S S P HL P+T PH G+
Sbjct: 2 SSSSPSSQSRLSVPGRTPHLPPLTIPHTVSAEGL 35
>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 614
Score = 26.6 bits (56), Expect = 1.9
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Frame = +3
Query: 213 NKMIIPVRCFTCGKVIGNKWEAYLGLLQADYTEGDALD-----VLGLKRYCCRRMLLGHV 377
NK + +C V+ N +A G+ + GD L+ +LGL RR LLG +
Sbjct: 178 NKPLDNFKCIENNNVVINSAKAMGGISITNIGAGDILEGREHLILGLVWQIIRRGLLGKI 237
Query: 378 DL 383
D+
Sbjct: 238 DI 239
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 26.2 bits (55), Expect = 2.6
Identities = 11/42 (26%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Frame = -3
Query: 417 FLMGNNSTVFQ*DPR-VRATFFCSSIFSIQGHPKHHLLCNPP 295
F++ + T F + + AT+ + +G P CNPP
Sbjct: 501 FIVNSRKTAFIVEHDFIMATYLADRVILFEGQPSRDARCNPP 542
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.8 bits (54), Expect = 3.4
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +2
Query: 251 ESYRKQM-GSLLRPATGGLHRR 313
ES+RK G+L P GG+HRR
Sbjct: 272 ESFRKHSNGNLSSPKIGGVHRR 293
>SPAC8C9.15c |tif225||translation initiation factor eIF2B epsilon
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 678
Score = 25.8 bits (54), Expect = 3.4
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = -1
Query: 407 GIIQQFFNEIHVSEQHSSAAVSFQSKDIQSITFCVIR 297
G+I+ NE+H+S+ SS S +D++ I F R
Sbjct: 463 GLIEST-NELHLSDSESSETSSSSEEDMEFIPFSARR 498
>SPCC584.03c |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 551
Score = 25.4 bits (53), Expect = 4.5
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 375 RVRATFFCSSIFSIQGHPKHHLLCNPPVAGLSKLPICFL*LSRM 244
+V TFF + I H K + N V ++P+C + RM
Sbjct: 191 QVGPTFFLRTYKIIDNHAKSGYISNDLVMWKEEMPVCIAKMFRM 234
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 4.5
Identities = 11/42 (26%), Positives = 22/42 (52%)
Frame = +2
Query: 161 LILYNPSASPQL*VVGNKQNDYSSTMFHMRESYRKQMGSLLR 286
L+ N +PQ+ + + Y+S H++E+ RK+ +R
Sbjct: 341 LVALNSDVAPQVSIANIPPSVYASCPLHVQEAIRKRQEQEIR 382
>SPAC6F6.12 |||autophagy associated protein
Atg24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 401
Score = 25.0 bits (52), Expect = 5.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = -1
Query: 242 ETSYWNNHFVYFLQPKV 192
E WNN+ +F+QPK+
Sbjct: 133 ENPNWNNYVRFFIQPKL 149
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 24.6 bits (51), Expect = 7.8
Identities = 14/38 (36%), Positives = 22/38 (57%)
Frame = -2
Query: 397 NSFSMRSTCPSNILLQQYLFNPRTSKASPSV*SACSRP 284
+SFS R+ P+N+ +QQ + + +PS SA S P
Sbjct: 255 HSFSARNI-PANVSMQQQMGRRGSIPVNPSTFSASSPP 291
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,009,338
Number of Sequences: 5004
Number of extensions: 41395
Number of successful extensions: 86
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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