Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17p18
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr 2...    42   6e-05
SPAC3A12.03c |mug145||ubiquitin-protein ligase E3 |Schizosacchar...    27   2.3  
SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr 1|...    26   5.3  
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    26   5.3  
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom...    26   5.3  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    25   7.1  

>SPBC26H8.08c |grn1||GTPase Grn1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 42.3 bits (95), Expect = 6e-05
 Identities = 25/58 (43%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
 Frame = +3

Query: 198 LKKPSKRQPARLRYKIEKKVKEHNRKQRXXXXXXXXXXXXXPIQ--IPNICPFKEDIL 365
           LKK SKR+  RLR +IEKK  E  RKQ+             P    IPN  P+K+ IL
Sbjct: 4   LKKKSKRRTTRLRSRIEKKAAESKRKQKRADKKNPQWKSRIPKDPGIPNSFPYKDKIL 61


>SPAC3A12.03c |mug145||ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 309

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 7/25 (28%), Positives = 18/25 (72%)
 Frame = -2

Query: 299 ILFSFFTLLTIMLFHFFFYFVSKTC 225
           +LF+   +L+++  +FFF+++ + C
Sbjct: 24  LLFALVIILSVIFINFFFFYLCRCC 48


>SPAC24B11.12c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1402

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -2

Query: 335 RNLNWLGFLRFRILFS 288
           RNLNW  +L F ILFS
Sbjct: 449 RNLNWNVYLNFIILFS 464


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1441

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -3

Query: 325  IGLVFLDLGFFLASLRCLR 269
            +G+ F+DLG +  S +CLR
Sbjct: 1201 VGVSFIDLGSYTLSAKCLR 1219


>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 892

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 11/47 (23%), Positives = 23/47 (48%)
 Frame = +1

Query: 493 HWLQMHKLEEKCMKPSMEIVNLLKTLNLEKTGSRKIXSKHIIENLKK 633
           H + +H+L +  M+P      L + +   +T   K+ ++   E +KK
Sbjct: 631 HIVDIHRLRDDAMQPEFSTEQLQRYIRYARTFKPKLNTESCAEIVKK 677


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 522 KVHEAF-NGDSQPSQDIEFGKDRKQENSLKTYYREFKKVISE 644
           K+ E   N D    QD +F K  + ++ L++Y    +  ISE
Sbjct: 517 KIQEMIENADKFKQQDKDFAKKLEAKSQLESYISNIETTISE 558


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,195,869
Number of Sequences: 5004
Number of extensions: 38203
Number of successful extensions: 95
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)