Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17p18
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_04_0053 - 15444421-15444747,15444905-15445116,15445198-154453...    37   0.016
01_01_0777 - 6017131-6017243,6018069-6018339,6018432-6018617,601...    29   3.2  
07_01_0042 - 334417-334431,334563-334688,334852-335136,335220-33...    28   5.5  

>01_04_0053 -
           15444421-15444747,15444905-15445116,15445198-15445377,
           15445572-15445836,15446308-15446522,15446611-15446784,
           15446872-15447010,15447523-15447786
          Length = 591

 Score = 36.7 bits (81), Expect = 0.016
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
 Frame = +3

Query: 183 MAKFKLKKPSKRQPARLRYKIEKKVKEHNRKQRXXXXXXXXXXXXXPIQ---IPNICPFK 353
           M K   K  SKR   R ++K+ +KVKEH+RK+R               +   IPN  PFK
Sbjct: 1   MVKKSKKSKSKRVTLRQKHKVLRKVKEHHRKKRKEAKKEGKSHRKKVEKDPGIPNEWPFK 60

Query: 354 EDIL 365
           E  L
Sbjct: 61  EQEL 64


>01_01_0777 -
           6017131-6017243,6018069-6018339,6018432-6018617,
           6018703-6018735,6018827-6018925,6019042-6019281,
           6019747-6020064,6020197-6020254,6020333-6020389,
           6020577-6020792,6020885-6021000
          Length = 568

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 353 FKWTYIRNLNWLGFLRFRILFSFFTLLTIMLFHFFFYFVSKT 228
           F+  Y+RNL+W   L   I+ SFF +  I+ F F  Y   K+
Sbjct: 58  FELAYLRNLSWKVSLVDNIIDSFFAIDIILTF-FLAYLDQKS 98


>07_01_0042 -
           334417-334431,334563-334688,334852-335136,335220-335368,
           336239-336536,337030-337131,337245-337613,337973-338115,
           338334-338518,339246-339475,339734-339821,340158-340253,
           340397-340512,340604-340852,340950-341175,341411-341622
          Length = 962

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = -2

Query: 614 ICFEXIFLLPVFSKFNVLRRLTISIEGFMHFSSSLCI 504
           ICF  ++ LP F    V  R+ +S+   ++FSS L I
Sbjct: 76  ICFASLYHLPSFQSMGVDMRMNLSLFLTIYFSSVLFI 112


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,512,485
Number of Sequences: 37544
Number of extensions: 193980
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)