Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17p18
(645 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical pr... 61 8e-10
AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical ... 32 0.40
U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical pr... 29 2.8
AY954523-1|AAX34431.1| 729|Caenorhabditis elegans anion transpo... 29 2.8
AY887907-1|AAX34419.1| 729|Caenorhabditis elegans anion transpo... 29 2.8
AC006625-1|AAK68277.2| 729|Caenorhabditis elegans Sulfate perme... 29 2.8
AL032631-15|CAA21579.1| 137|Caenorhabditis elegans Hypothetical... 28 4.9
Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical pr... 28 6.5
AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical ... 27 8.6
AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z49068-9|CAA88860.1| 556|Caenorhabditis elegans Hypothetical
protein K01C8.9 protein.
Length = 556
Score = 60.9 bits (141), Expect = 8e-10
Identities = 31/62 (50%), Positives = 38/62 (61%), Gaps = 1/62 (1%)
Frame = +3
Query: 183 MAKFKLKKPSKRQPARLRYKIEKKVKEHNRK-QRXXXXXXXXXXXXXPIQIPNICPFKED 359
MAK+ LKK SKR RYKIEKKV++HNRK ++ I +PN CPFKE+
Sbjct: 1 MAKYCLKKTSKRVSCAKRYKIEKKVRDHNRKVKKEAKKNGTTNKKEKTISVPNSCPFKEE 60
Query: 360 IL 365
IL
Sbjct: 61 IL 62
>AF036703-3|AAB88556.2| 424|Caenorhabditis elegans Hypothetical
protein T11F8.2 protein.
Length = 424
Score = 31.9 bits (69), Expect = 0.40
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = -2
Query: 353 FKWTYIRNLNWLGFLRFRILFSFFTLLTIMLFHFFFYFV 237
FKW+Y++ + + FL F L F+ + +F +FV
Sbjct: 261 FKWSYMKGTHTISFLSFMALLCFYNFQRSPMTTYFAFFV 299
>U56961-6|AAK39299.1| 497|Caenorhabditis elegans Hypothetical
protein T19D7.1 protein.
Length = 497
Score = 29.1 bits (62), Expect = 2.8
Identities = 14/27 (51%), Positives = 19/27 (70%)
Frame = -2
Query: 632 FFKFSIICFEXIFLLPVFSKFNVLRRL 552
FFKFSI F+ F LP++ F VLR++
Sbjct: 10 FFKFSI--FDAKFKLPMYQLFTVLRKI 34
>AY954523-1|AAX34431.1| 729|Caenorhabditis elegans anion
transporter SULP-1b protein.
Length = 729
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 362 YVFFKWTYIRNLNWLGFLRFRILFSFFTLLTIMLFHFFF 246
++ FKW R L + + F FF LLT+ L FFF
Sbjct: 260 FIIFKWRLSRFL--ISKIGFSAPHEFFVLLTVTLIIFFF 296
>AY887907-1|AAX34419.1| 729|Caenorhabditis elegans anion
transporter SULP-1a protein.
Length = 729
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 362 YVFFKWTYIRNLNWLGFLRFRILFSFFTLLTIMLFHFFF 246
++ FKW R L + + F FF LLT+ L FFF
Sbjct: 260 FIIFKWRLSRFL--ISKIGFSAPHEFFVLLTVTLIIFFF 296
>AC006625-1|AAK68277.2| 729|Caenorhabditis elegans Sulfate permease
family protein 1 protein.
Length = 729
Score = 29.1 bits (62), Expect = 2.8
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -2
Query: 362 YVFFKWTYIRNLNWLGFLRFRILFSFFTLLTIMLFHFFF 246
++ FKW R L + + F FF LLT+ L FFF
Sbjct: 260 FIIFKWRLSRFL--ISKIGFSAPHEFFVLLTVTLIIFFF 296
>AL032631-15|CAA21579.1| 137|Caenorhabditis elegans Hypothetical
protein Y106G6H.16 protein.
Length = 137
Score = 28.3 bits (60), Expect = 4.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 311 LRFRILFSFFTLLTIMLFHFFFYFVSKTC 225
LR +L FTLL ++ +HF+F + C
Sbjct: 104 LRCTVLIIIFTLLCLIAYHFYFLRLPTRC 132
>Z93397-6|CAB07718.2| 550|Caenorhabditis elegans Hypothetical
protein ZC482.4 protein.
Length = 550
Score = 27.9 bits (59), Expect = 6.5
Identities = 17/43 (39%), Positives = 23/43 (53%)
Frame = +3
Query: 132 TYGVTVKVCFLLYIHSDMAKFKLKKPSKRQPARLRYKIEKKVK 260
TYGV ++ L +S + K L KPSKR+ Y+IE K
Sbjct: 115 TYGVFIRNNTQLVDYSILDKIHLYKPSKRE--ECEYRIENNPK 155
>AC024880-2|AAF60914.4| 665|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2a protein.
Length = 665
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 335 RNLNWLGFLRFRILFSFFTLLTIMLFHFFF 246
R L WL F + F LLTI+LF+F F
Sbjct: 20 RGLPWL----FSVFVVLFLLLTILLFYFIF 45
>AC024880-1|AAR12985.1| 634|Caenorhabditis elegans Hypothetical
protein Y97E10AR.2b protein.
Length = 634
Score = 27.5 bits (58), Expect = 8.6
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -2
Query: 335 RNLNWLGFLRFRILFSFFTLLTIMLFHFFF 246
R L WL F + F LLTI+LF+F F
Sbjct: 20 RGLPWL----FSVFVVLFLLLTILLFYFIF 45
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,962,858
Number of Sequences: 27780
Number of extensions: 210818
Number of successful extensions: 675
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 674
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1423653030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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