Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17p18
         (645 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    23   3.3  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.4  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    22   4.4  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -2

Query: 320 LGFLRFRILFSFFTLLTIMLFHFF 249
           LG+L F    SF+  L +M+F ++
Sbjct: 204 LGYLIFSSTISFYLPLFVMVFTYY 227


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 134 IWCYCKSLFFIIYTF 178
           IW Y   LF IIY++
Sbjct: 222 IWVYFVPLFLIIYSY 236


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +2

Query: 134 IWCYCKSLFFIIYTF 178
           IW Y   LF IIY++
Sbjct: 98  IWVYFVPLFLIIYSY 112


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,803
Number of Sequences: 438
Number of extensions: 2514
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19438227
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)