Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17p14
(685 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_54230| Best HMM Match : EGF (HMM E-Value=0) 32 0.38
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21) 32 0.50
SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09) 30 1.5
SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_22957| Best HMM Match : EGF (HMM E-Value=7e-39) 29 3.5
SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_32235| Best HMM Match : Peptidase_A17 (HMM E-Value=4.2e-08) 29 3.5
SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_2152| Best HMM Match : EGF (HMM E-Value=0) 29 3.5
SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06) 29 4.6
SB_54204| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
SB_3935| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.1
>SB_54230| Best HMM Match : EGF (HMM E-Value=0)
Length = 1359
Score = 32.3 bits (70), Expect = 0.38
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 344 YSCSCAPRCTTRRSCKIGFTNTCCPSA 424
Y CSC P C T + C+ G N C PS+
Sbjct: 899 YRCSCCPPCFTGQHCEKGI-NKCIPSS 924
>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
Length = 959
Score = 31.9 bits (69), Expect = 0.50
Identities = 16/44 (36%), Positives = 19/44 (43%)
Frame = +2
Query: 305 CHPKQYYSTK*ALYSCSCAPRCTTRRSCKIGFTNTCCPSAPRRR 436
C Y K L C C P CT+ + C F +T CP R R
Sbjct: 127 CTAGMDYGRKDELNECRCDPYCTSFKDCCADF-DTFCPEVARGR 169
>SB_25136| Best HMM Match : Thiolase_N (HMM E-Value=4.4e-09)
Length = 162
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 177 TAGNVLGHKLDRLLVAEHVSERELVLAEFELPDFNLSH 64
+ G V+GH DRL A HVS +E E+ L L+H
Sbjct: 8 STGEVMGHSADRLASAFHVSRQE--QDEYALRSHTLAH 43
>SB_17924| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 532
Score = 29.5 bits (63), Expect = 2.7
Identities = 25/91 (27%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Frame = +1
Query: 22 QVITCLINLI**IKMAQVKIGQFKFGQDEFT-LRYVLGDEQPVKFVAKDIARSLK-YVNY 195
Q+I+CL N+ K+ +V G+F Q + LR +L K+ I + Y N+
Sbjct: 285 QMISCLPNVFIASKLVKVYWGEFSIVQAKMNCLRNLLKSPVKWKYYLHMIGQDFPLYTNH 344
Query: 196 EKAVRVHVDVKYKTTYEQACINISKENRVKH 288
E VR + Y E + IS +R ++
Sbjct: 345 E-MVRAIKTLNYTNNMESIKVPISNRDRTEY 374
>SB_22957| Best HMM Match : EGF (HMM E-Value=7e-39)
Length = 201
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 344 YSCSCAPRCTTRRSCKIGFTNTCCPSAPRRR*ACSKT 454
Y+C C PR T R C N C P+ + C +T
Sbjct: 12 YTCLCGPR-WTGRDCSTNLGNLCDPNPCQNGGVCKET 47
>SB_52794| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1408
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 344 YSCSCAPRCTTRRSCKIGFTNTCCPSAPRRR*ACSKT 454
Y+C C PR T R C N C P+ + C +T
Sbjct: 459 YTCLCGPR-WTGRDCSTNLGNLCDPNPCQNGGVCKET 494
>SB_32235| Best HMM Match : Peptidase_A17 (HMM E-Value=4.2e-08)
Length = 525
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/72 (20%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Frame = +1
Query: 127 LGDEQPVKFVAKDIARSL--KYVNYEKAVRVHVDVKYKTTYEQACINISKENRVKHGDPL 300
LG P+ + K + R + + + +++ + + ++K + I R+ PL
Sbjct: 137 LGLASPITVLGKMVYRDICDRGLKWDEPLPTEISQRWKAWESRLPERIEVPRRISGHYPL 196
Query: 301 YLSPQTILLDKI 336
Y+ P+T+L +K+
Sbjct: 197 YIPPRTLLAEKL 208
>SB_28811| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 982
Score = 29.1 bits (62), Expect = 3.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 354 HALQDAQRGGAAKLVLRTRVAPVHRVGVEPAPRRPSDGKV 473
H LQD ++V R+ PV+R G P P + GK+
Sbjct: 837 HKLQDRWEDVPYRVVRRSEKQPVYRSGQAPNPESNTGGKI 876
>SB_2152| Best HMM Match : EGF (HMM E-Value=0)
Length = 1603
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 344 YSCSCAPRCTTRRSCKIGFTNTCCPSAPRRR*ACSKT 454
Y+C C PR T R C N C P+ + C +T
Sbjct: 36 YTCLCGPR-WTGRDCSTNLGNLCDPNPCQNGGVCKET 71
>SB_36935| Best HMM Match : Somatomedin_B (HMM E-Value=1.8e-06)
Length = 231
Score = 28.7 bits (61), Expect = 4.6
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +2
Query: 323 YSTK*ALYSCSCAPRCTTRRSCKIGFTNTCCP 418
Y K L C C P CT+ + C F +T CP
Sbjct: 200 YGRKDELNECRCDPYCTSFKDCCADF-DTFCP 230
>SB_54204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 366
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 289 GDPLYLSPQTILLDKIG 339
G P+YL+P+TIL D IG
Sbjct: 37 GAPMYLAPETILEDPIG 53
>SB_3935| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 60
Score = 27.9 bits (59), Expect = 8.1
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = +1
Query: 277 RVKHGDPLYLSPQTILLDKIGVIQLFMRSKMHNAAE 384
++ HG P Y + + LLD V+Q+ +R ++ AE
Sbjct: 18 KIFHGSPFYWAVEEGLLDPRRVVQIGLRGPWYDEAE 53
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,331,730
Number of Sequences: 59808
Number of extensions: 421488
Number of successful extensions: 1467
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1466
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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