Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17p14
(685 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U29244-5|AAC71090.1| 378|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical pr... 28 5.4
L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle position... 28 5.4
AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane... 28 5.4
Z79754-2|CAB02091.1| 578|Caenorhabditis elegans Hypothetical pr... 28 7.1
Z67755-2|CAA91755.2| 322|Caenorhabditis elegans Hypothetical pr... 28 7.1
U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon gu... 28 7.1
AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein. 28 7.1
AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical ... 28 7.1
Z69661-1|CAA93493.1| 253|Caenorhabditis elegans Hypothetical pr... 27 9.4
>U29244-5|AAC71090.1| 378|Caenorhabditis elegans Hypothetical
protein ZK1248.9 protein.
Length = 378
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +1
Query: 229 YKTTYEQACINISKENRVKHGDPLYLSP 312
Y+TT ACIN KE V+ G +Y +P
Sbjct: 16 YQTTANDACINRLKELNVESGAKIYTTP 43
>Z46787-5|CAA86743.1| 409|Caenorhabditis elegans Hypothetical
protein C16C10.5 protein.
Length = 409
Score = 28.7 bits (61), Expect = 4.1
Identities = 19/53 (35%), Positives = 23/53 (43%)
Frame = +1
Query: 259 NISKENRVKHGDPLYLSPQTILLDKIGVIQLFMRSKMHNAAELQNWFYEHVLP 417
+I K G PLYL ++I KI I R H A LQN E + P
Sbjct: 41 SIFKIGHFPRGSPLYLLEKSITFSKIISIFSGHRMGQHGAIRLQNEVQEGMPP 93
>Z77655-1|CAB01137.1| 393|Caenorhabditis elegans Hypothetical
protein C56A3.1 protein.
Length = 393
Score = 28.3 bits (60), Expect = 5.4
Identities = 11/27 (40%), Positives = 13/27 (48%)
Frame = +2
Query: 347 SCSCAPRCTTRRSCKIGFTNTCCPSAP 427
SC CAP C SC + CP+ P
Sbjct: 45 SCGCAPACPQAPSCPVCPPPQPCPAPP 71
>L16679-1|AAA28092.5| 2104|Caenorhabditis elegans Muscle positioning
protein 4 protein.
Length = 2104
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 416 GNTCS*NQFCSSAALCILERMNSCITPILSSNIVWG--DKYSGSPCLTRFSLLILIHACS 243
GN + C+++ + CI LSSN+ D Y+G C T S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLILMTL 1866
Query: 242 YVVLYL 225
+L+L
Sbjct: 1867 LALLFL 1872
>AF289202-1|AAK69172.1| 2104|Caenorhabditis elegans transmembrane
matrix receptor MUP-4 protein.
Length = 2104
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Frame = -3
Query: 416 GNTCS*NQFCSSAALCILERMNSCITPILSSNIVWG--DKYSGSPCLTRFSLLILIHACS 243
GN + C+++ + CI LSSN+ D Y+G C T S L LI
Sbjct: 1807 GNPSQPGRICAASLCGLCNGHGDCIHDALSSNVTCACLDGYTGQFCETAPSNLPLILMTL 1866
Query: 242 YVVLYL 225
+L+L
Sbjct: 1867 LALLFL 1872
>Z79754-2|CAB02091.1| 578|Caenorhabditis elegans Hypothetical
protein F25H2.2 protein.
Length = 578
Score = 27.9 bits (59), Expect = 7.1
Identities = 9/14 (64%), Positives = 14/14 (100%)
Frame = -2
Query: 258 NTCLLIRRFVFDID 217
++CLL+R+F+FDID
Sbjct: 353 SSCLLLRKFIFDID 366
>Z67755-2|CAA91755.2| 322|Caenorhabditis elegans Hypothetical
protein F54F7.2 protein.
Length = 322
Score = 27.9 bits (59), Expect = 7.1
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 130 GDEQPVKFVAKDIARSLKYVNYEKAVRVHVDVKYKTTY 243
GD PV V+ DI ++ +VRV ++V+Y T Y
Sbjct: 164 GDSVPVN-VSSDIGLVIEAAFMNPSVRVEIEVEYSTPY 200
>U11279-1|AAW88399.1| 2886|Caenorhabditis elegans Sensory axon
guidance protein 2,isoform a protein.
Length = 2886
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 347 CITPILSSNIVWGDKYSGSPCLTRFS 270
C+ PIL + W +KY S CL+ S
Sbjct: 112 CLPPILKVLVEWYEKYDESLCLSMLS 137
>AY763581-1|AAV41897.1| 2914|Caenorhabditis elegans SAX-2 protein.
Length = 2914
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -3
Query: 347 CITPILSSNIVWGDKYSGSPCLTRFS 270
C+ PIL + W +KY S CL+ S
Sbjct: 112 CLPPILKVLVEWYEKYDESLCLSMLS 137
>AL110482-6|CAB60339.1| 179|Caenorhabditis elegans Hypothetical
protein Y39G8B.7 protein.
Length = 179
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/33 (39%), Positives = 16/33 (48%)
Frame = +2
Query: 356 CAPRCTTRRSCKIGFTNTCCPSAPRRR*ACSKT 454
C+P C + K GF CC S R C+KT
Sbjct: 120 CSPNCASW--AKRGFCTNCCYSCQDRERYCAKT 150
>Z69661-1|CAA93493.1| 253|Caenorhabditis elegans Hypothetical
protein F48F7.3 protein.
Length = 253
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Frame = +1
Query: 193 YEKAVRVHVDVKYKTTYEQACINISKENRVKHGDPLYLS-PQTILLDKIGVIQLFMR 360
YE ++V ++ Y +A I++ N+ +HG L L + +D IG+ L R
Sbjct: 37 YEDIIQVDINENYHNITYKAIFWINEINKCRHGPKLLLKIDDDVHIDMIGLQFLIKR 93
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,244,859
Number of Sequences: 27780
Number of extensions: 305718
Number of successful extensions: 842
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 810
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 842
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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