Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17p12
(541 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0311 - 2075881-2076165,2076450-2076519,2076628-2076691,207... 29 1.8
06_01_0520 + 3761990-3762327,3763304-3763589,3763746-3763820,376... 29 2.4
07_03_0713 - 20882442-20883068,20883950-20883955 28 4.1
09_04_0365 - 16962608-16963174,16963301-16963486,16963824-169638... 28 5.5
03_06_0654 - 35307122-35307205,35307381-35307444,35307486-353075... 28 5.5
07_01_0337 + 2409586-2409888,2409927-2409977 27 7.2
01_04_0078 + 15796336-15797130 27 7.2
12_01_0027 - 225670-225870,225989-226126,226315-226392,226523-22... 27 9.6
01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987 27 9.6
>02_01_0311 -
2075881-2076165,2076450-2076519,2076628-2076691,
2076798-2076837,2076930-2077006,2077095-2077311,
2077482-2078132
Length = 467
Score = 29.5 bits (63), Expect = 1.8
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = -3
Query: 470 MCAPVSLVMEWQVLKDSPSPKVLALSSFRSSYGT 369
M PVS + + L+D+ SP + LSS RSS GT
Sbjct: 227 MSLPVSSCSDQEDLQDARSPAKVQLSSSRSSSGT 260
>06_01_0520 +
3761990-3762327,3763304-3763589,3763746-3763820,
3764013-3764961,3766967-3767064,3768144-3768284,
3768758-3768874,3768924-3769013,3769014-3771818
Length = 1632
Score = 29.1 bits (62), Expect = 2.4
Identities = 30/106 (28%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Frame = +1
Query: 142 MMHQQSMMVGDVIPVHPDVPMHV--EEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQ 315
+ HQQ M + P+HP + +H+ E NV V + LF + QP +N+Q
Sbjct: 664 LSHQQIMDLNKTWPLHPILLIHLASELPKNVSLMQVVRLLH--LFSSRNRLQPRQNQNLQ 721
Query: 316 QATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGES-LRTCHSIT 450
K SSL Q + + N+++ G +S +TC S T
Sbjct: 722 DELPKESEMSSLVNQT-----DIQSSSNSSSHGSFKSPCQTCSSST 762
>07_03_0713 - 20882442-20883068,20883950-20883955
Length = 210
Score = 28.3 bits (60), Expect = 4.1
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 268 FPALPHSQPLVQRNIQQATNKLRVGSSLHTQVFH 369
FP++P Q RN+QQ +K S+L T FH
Sbjct: 5 FPSVPAKQRRRPRNLQQVKDK-ATASALETAAFH 37
>09_04_0365 -
16962608-16963174,16963301-16963486,16963824-16963896,
16964307-16964497,16964982-16965198,16965394-16965797,
16966593-16966658,16966668-16966721,16966945-16967079,
16967194-16967391,16967734-16967918,16968990-16969527
Length = 937
Score = 27.9 bits (59), Expect = 5.5
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = -3
Query: 434 VLKDSPSPKVLALSSFRSSYGTWK 363
+ KD P P V SSF + +G W+
Sbjct: 645 IQKDVPYPAVFVTSSFNTRFGVWE 668
>03_06_0654 -
35307122-35307205,35307381-35307444,35307486-35307536,
35307881-35307993,35308083-35308164,35308621-35308741,
35308821-35308980,35309335-35309396,35309548-35309707,
35309794-35310021
Length = 374
Score = 27.9 bits (59), Expect = 5.5
Identities = 22/55 (40%), Positives = 27/55 (49%)
Frame = +1
Query: 301 QRNIQQATNKLRVGSSLHTQVFHVPYEERKLDNANTFGEGESLRTCHSITKDTGA 465
+R IQ T L VGSS+ +V V EERKL F E ++ HS GA
Sbjct: 132 KRPIQDVTKDL-VGSSISVKVVEVNEEERKL----VFSEKDASWFTHSSLVKIGA 181
>07_01_0337 + 2409586-2409888,2409927-2409977
Length = 117
Score = 27.5 bits (58), Expect = 7.2
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +1
Query: 115 GQGLPEETKMMHQQSMMVGDVIPVHPDVP-MHVEEMNNVGYENNVSFAY 258
G G M Q+ + +GD +P+ P V + V +G+EN++ F Y
Sbjct: 64 GDGARRLVNMDAQKQIRMGDSLPIVPSVAFIRVHPQAEIGWENDL-FPY 111
>01_04_0078 + 15796336-15797130
Length = 264
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 268 FPALPHSQPLVQRNIQQATNKLRVGSSLHTQVFHVPYEERK 390
FP L + QP + I Q +L+ GSS H + F PY R+
Sbjct: 161 FP-LQNIQPFISGTISQQ-QRLQSGSSSHVESFGPPYVPRE 199
>12_01_0027 -
225670-225870,225989-226126,226315-226392,226523-226708,
226853-226945,227797-227863,228660-228964
Length = 355
Score = 27.1 bits (57), Expect = 9.6
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 2/77 (2%)
Frame = -1
Query: 313 VYYVAQGAGNAAMLEIGHRRQMTHCSHIQHYSFLQ--HAWVHQDERVSHLQPSWIADASF 140
+Y+ AQG A+ +GH +++H +H Q++ ++ +W E++ + F
Sbjct: 83 LYWAAQGTMFWALFVLGHDWRISHRTHHQNHGHIEKDESWHPITEKLYRKLETRTKKLRF 142
Query: 139 LSPPAVLVRAESLQYKS 89
P +L L Y+S
Sbjct: 143 TLPFPLLAFPVYLWYRS 159
>01_06_1526 + 38003071-38003247,38003338-38003690,38004489-38004987
Length = 342
Score = 27.1 bits (57), Expect = 9.6
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = -3
Query: 455 SLVMEWQVLKDSPSPKVLALSSFRSSYGTWKT*VCSEEPTRSLFVACC 312
SLV +W K PS K A + F++ ++ + ++ R++F CC
Sbjct: 29 SLVKKWHPDKHPPSSKPEAEARFKAITEAYEA-LLDQQENRAVFGVCC 75
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,138
Number of Sequences: 37544
Number of extensions: 329856
Number of successful extensions: 878
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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