Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17p12
(541 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein ... 85 1e-16
BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotei... 85 1e-16
AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein. 84 3e-16
BC146755-1|AAI46756.1| 1321|Homo sapiens SPAG9 protein protein. 30 4.5
AY850123-1|AAX47276.1| 1307|Homo sapiens sperm associated antige... 30 4.5
AY236487-1|AAP74807.1| 766|Homo sapiens proliferation-inducing ... 30 4.5
AK024068-1|BAB14812.1| 734|Homo sapiens protein ( Homo sapiens ... 30 4.5
AF542172-1|AAQ11383.1| 508|Homo sapiens HLC-6 protein. 30 4.5
AF327452-1|AAN61565.1| 1311|Homo sapiens JNK-associated leucine-... 30 4.5
AB011088-1|BAA25442.3| 1382|Homo sapiens KIAA0516 protein protein. 30 4.5
D13969-1|BAA03074.1| 344|Homo sapiens Mel-18 protein protein. 30 6.0
BC024255-1|AAH24255.1| 344|Homo sapiens polycomb group ring fin... 30 6.0
BC004858-1|AAH04858.1| 344|Homo sapiens polycomb group ring fin... 30 6.0
>M64098-1|AAA35962.1| 1268|Homo sapiens high density lipoprotein
binding protein protein.
Length = 1268
Score = 85.4 bits (202), Expect = 1e-16
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Frame = +1
Query: 196 VPMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQQAT---NKLR-VGSSLHTQV 363
VP ++ E + Y D FP LP ++ + A NK+R + +S+ TQV
Sbjct: 20 VPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPAGAWGNKIRPIKASVITQV 79
Query: 364 FHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLE 540
FHVP EERK + N FGEGE + C I + TGAH+E+S +KD L+ +++GK AV++
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMK 138
>BC001179-1|AAH01179.1| 1268|Homo sapiens high density lipoprotein
binding protein (vigilin) protein.
Length = 1268
Score = 85.4 bits (202), Expect = 1e-16
Identities = 46/119 (38%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Frame = +1
Query: 196 VPMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQQAT---NKLR-VGSSLHTQV 363
VP ++ E + Y D FP LP ++ + A NK+R + +S+ TQV
Sbjct: 20 VPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPAGAWGNKIRPIKASVITQV 79
Query: 364 FHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLE 540
FHVP EERK + N FGEGE + C I + TGAH+E+S +KD L+ +++GK AV++
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMK 138
>AC104841-2|AAY14717.1| 1268|Homo sapiens unknown protein.
Length = 1268
Score = 84.2 bits (199), Expect = 3e-16
Identities = 45/119 (37%), Positives = 68/119 (57%), Gaps = 4/119 (3%)
Frame = +1
Query: 196 VPMHVEEMNNVGYENNVSFAYDDLFPALPHSQPLVQRNIQQAT---NKLR-VGSSLHTQV 363
VP ++ E + Y D FP LP ++ + + NK+R + +S+ TQV
Sbjct: 20 VPQQIKVATLNSEEESDPPTYKDAFPPLPEKAACLESAQEPSGAWGNKIRPIKASVITQV 79
Query: 364 FHVPYEERKLDNANTFGEGESLRTCHSITKDTGAHIEISTSKDGSLTFLITGKQSAVLE 540
FHVP EERK + N FGEGE + C I + TGAH+E+S +KD L+ +++GK AV++
Sbjct: 80 FHVPLEERKYKDMNQFGEGEQAKICLEIMQRTGAHLELSLAKDQGLSIMVSGKLDAVMK 138
>BC146755-1|AAI46756.1| 1321|Homo sapiens SPAG9 protein protein.
Length = 1321
Score = 30.3 bits (65), Expect = 4.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 97 TVTTRRGQGLPEETKMMHQQSMMVGDVI--PVHPDVPMHVEEMNNVGYENNVSFAYDDLF 270
T T G E+T + Q + V P+ +P E+++ V +N S AY D
Sbjct: 892 TEATEGNAGSAEDTVDISQTGVYTEHVFTDPLGVQIP---EDLSPVYQSSNDSDAYKDQI 948
Query: 271 PALPHSQPLVQRNIQQATNKL 333
LP+ Q LV+ Q+ ++ L
Sbjct: 949 SVLPNEQDLVREEAQKMSSLL 969
>AY850123-1|AAX47276.1| 1307|Homo sapiens sperm associated antigen 9
transcript variant 1 protein.
Length = 1307
Score = 30.3 bits (65), Expect = 4.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 97 TVTTRRGQGLPEETKMMHQQSMMVGDVI--PVHPDVPMHVEEMNNVGYENNVSFAYDDLF 270
T T G E+T + Q + V P+ +P E+++ V +N S AY D
Sbjct: 878 TEATEGNAGSAEDTVDISQTGVYTEHVFTDPLGVQIP---EDLSPVYQSSNDSDAYKDQI 934
Query: 271 PALPHSQPLVQRNIQQATNKL 333
LP+ Q LV+ Q+ ++ L
Sbjct: 935 SVLPNEQDLVREEAQKMSSLL 955
>AY236487-1|AAP74807.1| 766|Homo sapiens proliferation-inducing
gene 6 protein.
Length = 766
Score = 30.3 bits (65), Expect = 4.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 97 TVTTRRGQGLPEETKMMHQQSMMVGDVI--PVHPDVPMHVEEMNNVGYENNVSFAYDDLF 270
T T G E+T + Q + V P+ +P E+++ V +N S AY D
Sbjct: 324 TEATEGNAGSAEDTVDISQTGVYTEHVFTDPLGVQIP---EDLSPVYQSSNDSDAYKDQI 380
Query: 271 PALPHSQPLVQRNIQQATNKL 333
LP+ Q LV+ Q+ ++ L
Sbjct: 381 SVLPNEQDLVREEAQKMSSLL 401
>AK024068-1|BAB14812.1| 734|Homo sapiens protein ( Homo sapiens
cDNA FLJ14006 fis, clone Y79AA1002399, highly similar to
Homo sapiens mRNA for sperm protein. ).
Length = 734
Score = 30.3 bits (65), Expect = 4.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 97 TVTTRRGQGLPEETKMMHQQSMMVGDVI--PVHPDVPMHVEEMNNVGYENNVSFAYDDLF 270
T T G E+T + Q + V P+ +P E+++ V +N S AY D
Sbjct: 528 TEATEGNAGSAEDTVDISQTGVYTEHVFTDPLGVQIP---EDLSPVYQSSNDSDAYKDQI 584
Query: 271 PALPHSQPLVQRNIQQATNKL 333
LP+ Q LV+ Q+ ++ L
Sbjct: 585 SVLPNEQDLVREEAQKMSSLL 605
>AF542172-1|AAQ11383.1| 508|Homo sapiens HLC-6 protein.
Length = 508
Score = 30.3 bits (65), Expect = 4.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 97 TVTTRRGQGLPEETKMMHQQSMMVGDVI--PVHPDVPMHVEEMNNVGYENNVSFAYDDLF 270
T T G E+T + Q + V P+ +P E+++ V +N S AY D
Sbjct: 66 TEATEGNAGSAEDTVDISQTGVYTEHVFTDPLGVQIP---EDLSPVYQSSNDSDAYKDQI 122
Query: 271 PALPHSQPLVQRNIQQATNKL 333
LP+ Q LV+ Q+ ++ L
Sbjct: 123 SVLPNEQDLVREEAQKMSSLL 143
>AF327452-1|AAN61565.1| 1311|Homo sapiens JNK-associated
leucine-zipper protein protein.
Length = 1311
Score = 30.3 bits (65), Expect = 4.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 97 TVTTRRGQGLPEETKMMHQQSMMVGDVI--PVHPDVPMHVEEMNNVGYENNVSFAYDDLF 270
T T G E+T + Q + V P+ +P E+++ V +N S AY D
Sbjct: 882 TEATEGNAGSAEDTVDISQTGVYTEHVFTDPLGVQIP---EDLSPVYQSSNDSDAYKDQI 938
Query: 271 PALPHSQPLVQRNIQQATNKL 333
LP+ Q LV+ Q+ ++ L
Sbjct: 939 SVLPNEQDLVREEAQKMSSLL 959
>AB011088-1|BAA25442.3| 1382|Homo sapiens KIAA0516 protein protein.
Length = 1382
Score = 30.3 bits (65), Expect = 4.5
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
Frame = +1
Query: 97 TVTTRRGQGLPEETKMMHQQSMMVGDVI--PVHPDVPMHVEEMNNVGYENNVSFAYDDLF 270
T T G E+T + Q + V P+ +P E+++ V +N S AY D
Sbjct: 953 TEATEGNAGSAEDTVDISQTGVYTEHVFTDPLGVQIP---EDLSPVYQSSNDSDAYKDQI 1009
Query: 271 PALPHSQPLVQRNIQQATNKL 333
LP+ Q LV+ Q+ ++ L
Sbjct: 1010 SVLPNEQDLVREEAQKMSSLL 1030
>D13969-1|BAA03074.1| 344|Homo sapiens Mel-18 protein protein.
Length = 344
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 153 LMHHFCLLRQSLSAPSRYSTKVLYQIK-LKDYAVDARIVQFFP 28
+MH LR + PS+Y +VLY+ + LK+Y I +P
Sbjct: 174 VMHLAKFLRNKMDVPSKYKVEVLYEDEPLKEYYTLMDIAYIYP 216
>BC024255-1|AAH24255.1| 344|Homo sapiens polycomb group ring finger
2 protein.
Length = 344
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 153 LMHHFCLLRQSLSAPSRYSTKVLYQIK-LKDYAVDARIVQFFP 28
+MH LR + PS+Y +VLY+ + LK+Y I +P
Sbjct: 174 VMHLAKFLRNKMDVPSKYKVEVLYEDEPLKEYYTLMDIAYIYP 216
>BC004858-1|AAH04858.1| 344|Homo sapiens polycomb group ring finger
2 protein.
Length = 344
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Frame = -2
Query: 153 LMHHFCLLRQSLSAPSRYSTKVLYQIK-LKDYAVDARIVQFFP 28
+MH LR + PS+Y +VLY+ + LK+Y I +P
Sbjct: 174 VMHLAKFLRNKMDVPSKYKVEVLYEDEPLKEYYTLMDIAYIYP 216
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,709,783
Number of Sequences: 237096
Number of extensions: 1877829
Number of successful extensions: 4106
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3967
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4106
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5251598958
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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