Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17p12
         (541 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   2.0  
S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor prot...    23   2.6  
S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor prot...    23   2.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   3.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   4.6  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    22   4.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.1  

>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 68  KITP*TPGSYNF 33
           KI P TPGS+NF
Sbjct: 299 KIFPPTPGSFNF 310


>S76957-1|AAB33932.1|  169|Apis mellifera olfactory receptor
           protein.
          Length = 169

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 329 LFVACCILRCTRGWECGNAGNRSS*ANDTLFSYPTLF 219
           +++   ILR +    C N    SS       SY TLF
Sbjct: 99  IYILMAILRMSADGGCRNFSTCSSHPTAAFISYGTLF 135


>S76956-1|AAB33931.1|  168|Apis mellifera olfactory receptor
           protein.
          Length = 168

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -3

Query: 329 LFVACCILRCTRGWECGNAGNRSS*ANDTLFSYPTLF 219
           +++   ILR +    C N    SS       SY TLF
Sbjct: 98  IYILMAILRMSADGGCRNFSTCSSHPTAAFISYGTLF 134


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -2

Query: 180 YHISNHHGLLMHHFCLLRQS 121
           YH+ NHH    +H  +L  S
Sbjct: 274 YHLDNHHVHHANHHAILGHS 293


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/32 (28%), Positives = 16/32 (50%)
 Frame = -3

Query: 455 SLVMEWQVLKDSPSPKVLALSSFRSSYGTWKT 360
           S+ + W    D  SP    +  ++ S G+W+T
Sbjct: 891 SVQLSWAAPYDGNSPIKRYVIEYKISKGSWET 922


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +1

Query: 124 LPEETKMMHQQSMMVGD 174
           +P++T+ + QQS   GD
Sbjct: 34  VPQQTQSVQQQSQQAGD 50


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 163 MVGDVIPVHPDVPMHV 210
           M+G  + VH DV  HV
Sbjct: 469 MIGQYVTVHGDVISHV 484


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.4 bits (43), Expect = 6.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +1

Query: 163 MVGDVIPVHPDVPMHV 210
           M+G  + VH DV  HV
Sbjct: 469 MIGQYVTVHGDVISHV 484


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,369
Number of Sequences: 438
Number of extensions: 3427
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)