Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17p01
         (609 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.04 |||auxin family transmembrane transporter |Schizosacc...    27   1.6  
SPMIT.02 |||mitochondrial DNA binding endonuclease|Schizosacchar...    25   8.7  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.7  
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    25   8.7  

>SPAC5D6.04 |||auxin family transmembrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = +3

Query: 375 RQLTRTISDINNILILLCLTFE*FNNSLIFTIKIQRSLLP 494
           R   + IS +N      CL FE   N L   + I  SLLP
Sbjct: 44  RDAQKVISSLNVYFFTPCLVFEKVGNGLNLKMLIDLSLLP 83


>SPMIT.02 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 384

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 102 KYSKLLDIRVSKYACKQYIP 43
           K SKL +IR+ K + KQY P
Sbjct: 222 KNSKLEEIRIEKKSLKQYSP 241


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 71  DTRISSNLEYFNLKVTYNKSTVISLNNIVDTICMLRRIVTYEEDC 205
           D  IS+ L Y    V+ NKS +++    + +  M+  + TY  DC
Sbjct: 719 DDFISATLLYMLEDVSRNKSQLLAEKKHLKSQLMVANLDTYSLDC 763


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -2

Query: 353 YTKKIKSN*INHLKLNYLNKISNFLVFTVCLYCYRVFEC 237
           + ++  +N + H KL  +  +S  L     L+C   F C
Sbjct: 450 HVQQTTANAVEHFKLRKITALSAALSLGTVLFCLHTFLC 488


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,289,105
Number of Sequences: 5004
Number of extensions: 43604
Number of successful extensions: 87
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 268287866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)