Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17p01
         (609 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF106575-13|AAC78162.2|  393|Caenorhabditis elegans Serpentine r...    28   6.0  
AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine re...    27   7.9  
AF003387-2|AAL16318.1|   95|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF106575-13|AAC78162.2|  393|Caenorhabditis elegans Serpentine
           receptor, class w protein96 protein.
          Length = 393

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 92  NYSIFVCQNMPVNNTFP 42
           N+ IF C+  P+N+TFP
Sbjct: 213 NFQIFSCKGTPLNSTFP 229


>AF101305-5|AAF98597.2|  341|Caenorhabditis elegans Serpentine
           receptor, class ab (class a-like) protein 3 protein.
          Length = 341

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 98  YFNLKVTYNKSTVISLNNIVDTICMLRRIVTYEED 202
           YF++K+ +N   V+  NN    I  L RIV + +D
Sbjct: 45  YFSVKLHFNSKIVLFTNNTFVLIHCLARIVLHGKD 79


>AF003387-2|AAL16318.1|   95|Caenorhabditis elegans Hypothetical
           protein C44B11.4 protein.
          Length = 95

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
 Frame = -2

Query: 260 YCYR--VFECYLFMFTVNSVSNLLHRLLSCVTYRLYQQYCLVK*QLTCY 120
           YC R    +C +F    N  +N   RL  CV       YC  K + TCY
Sbjct: 48  YCLRSACSQC-IFRDPFNPFANFCARLTDCVCSISNDPYCEKKIEATCY 95


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,132,577
Number of Sequences: 27780
Number of extensions: 230647
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)