Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17o18
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-3339|AAF53961.2| 1291|Drosophila melanogaster CG9256-PB...    35   0.10 
AE014134-3338|AAF53960.2| 1291|Drosophila melanogaster CG9256-PA...    35   0.10 
AY128467-1|AAM75060.1|  999|Drosophila melanogaster RE21674p pro...    33   0.41 
AF235935-1|AAF60313.1| 1203|Drosophila melanogaster sodium/hydro...    33   0.41 
AE014297-361|AAF51948.2|  278|Drosophila melanogaster CG11000-PA...    28   8.9  

>AE014134-3339|AAF53961.2| 1291|Drosophila melanogaster CG9256-PB,
           isoform B protein.
          Length = 1291

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 456 KNHVTFPEFQQNGSAKQFTHDYIDEVLQ-XXXXXXXXXXXXXXXXITFTAKSPP 614
           +NHV+F +FQQNG+ KQ T+   +E  Q                 +TFTAKS P
Sbjct: 820 QNHVSFHDFQQNGTTKQLTN--AEECQQNPNEINVVGPSDDWDDGLTFTAKSSP 871


>AE014134-3338|AAF53960.2| 1291|Drosophila melanogaster CG9256-PA,
           isoform A protein.
          Length = 1291

 Score = 34.7 bits (76), Expect = 0.10
 Identities = 21/54 (38%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = +3

Query: 456 KNHVTFPEFQQNGSAKQFTHDYIDEVLQ-XXXXXXXXXXXXXXXXITFTAKSPP 614
           +NHV+F +FQQNG+ KQ T+   +E  Q                 +TFTAKS P
Sbjct: 820 QNHVSFHDFQQNGTTKQLTN--AEECQQNPNEINVVGPSDDWDDGLTFTAKSSP 871


>AY128467-1|AAM75060.1|  999|Drosophila melanogaster RE21674p
           protein.
          Length = 999

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 456 KNHVTFPEFQQNGSAKQFTH 515
           +NHV+F +FQQNG+ KQ T+
Sbjct: 830 QNHVSFHDFQQNGTTKQLTN 849


>AF235935-1|AAF60313.1| 1203|Drosophila melanogaster sodium/hydrogen
           exchanger protein protein.
          Length = 1203

 Score = 32.7 bits (71), Expect = 0.41
 Identities = 12/20 (60%), Positives = 17/20 (85%)
 Frame = +3

Query: 456 KNHVTFPEFQQNGSAKQFTH 515
           +NHV+F +FQQNG+ KQ T+
Sbjct: 804 QNHVSFHDFQQNGTTKQLTN 823


>AE014297-361|AAF51948.2|  278|Drosophila melanogaster CG11000-PA
           protein.
          Length = 278

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 314 PTKSHGNLVDAGCAGPVIMTNLGG 385
           PT    NL+D  C+G V  T++GG
Sbjct: 228 PTTHCTNLIDTSCSGAVYHTDIGG 251


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,383,320
Number of Sequences: 53049
Number of extensions: 587493
Number of successful extensions: 1072
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)