Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17o14
(222 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 105 5e-24
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 104 1e-23
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 104 1e-23
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 30 0.22
06_03_1366 + 29601921-29602646 26 3.6
10_08_0514 + 18465474-18465760,18465888-18465978,18466670-184667... 25 6.2
03_03_0225 - 15587557-15588774 25 6.2
04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420 25 8.3
04_03_0973 + 21359391-21359885,21359984-21360169,21361054-21361344 25 8.3
03_05_0661 + 26532732-26532997,26533933-26534073,26535734-26535851 25 8.3
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 105 bits (252), Expect = 5e-24
Identities = 46/60 (76%), Positives = 55/60 (91%)
Frame = +1
Query: 1 KILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 180
K+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGVEVEVTI+D
Sbjct: 68 KVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGVEVEVTISD 127
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 104 bits (249), Expect = 1e-23
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +1
Query: 1 KILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 180
K+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIAD
Sbjct: 70 KVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 129
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 104 bits (249), Expect = 1e-23
Identities = 47/60 (78%), Positives = 53/60 (88%)
Frame = +1
Query: 1 KILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 180
K+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQITSI IEPGVEVEVTIAD
Sbjct: 67 KVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQITSITIEPGVEVEVTIAD 126
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 30.3 bits (65), Expect = 0.22
Identities = 12/38 (31%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +1
Query: 64 FQMRIHKRVIDLHSP-SEIVKQITSINIEPGVEVEVTI 174
F++R H+R+ID+ P ++ + + + + GV+VEV +
Sbjct: 394 FEIRTHQRLIDIMYPTAQTIDSLMQLQLPAGVDVEVKL 431
>06_03_1366 + 29601921-29602646
Length = 241
Score = 26.2 bits (55), Expect = 3.6
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 203 FIGGSAYASAMVTSTSTPGSMLIEVICFTISEGEC 99
F+G ASA+ + + PG+ + + +S+GEC
Sbjct: 21 FLGSRLPASALASWGTAPGTKTLLNLFLELSQGEC 55
>10_08_0514 +
18465474-18465760,18465888-18465978,18466670-18466767,
18466852-18466949,18468192-18468321,18468410-18468597,
18470291-18470323,18470627-18471000,18471116-18471294,
18471421-18471532,18471655-18471771,18471875-18472189,
18472405-18472743
Length = 786
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +1
Query: 43 GSKTWDRFQMRIHKRVIDLHSPS 111
G ++W R RIH RV H P+
Sbjct: 298 GLESWSRLVKRIHVRVPPCHRPA 320
>03_03_0225 - 15587557-15588774
Length = 405
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -3
Query: 124 VSQFQRESVGRSLSC 80
V Q+QRE VGR+L C
Sbjct: 179 VHQYQRELVGRALKC 193
>04_04_0367 + 24736376-24736806,24738257-24738407,24739334-24739420
Length = 222
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = -3
Query: 202 LLAALPTRRRWSPQPLHRAR 143
L +LP RRW P P RAR
Sbjct: 57 LRGSLPLVRRWVPSPPPRAR 76
>04_03_0973 + 21359391-21359885,21359984-21360169,21361054-21361344
Length = 323
Score = 25.0 bits (52), Expect = 8.3
Identities = 21/64 (32%), Positives = 30/64 (46%)
Frame = -1
Query: 219 FFSKIFYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLKTIPGL*TF 40
FF+ F++ L L G H N + +N FHNF + D SLV + L T+
Sbjct: 140 FFALFFFFALILW-GASH-NQKPVVSIN-SITFHNFVIQAGTDASLVPTELSTVNATVRM 196
Query: 39 TTRS 28
T R+
Sbjct: 197 TFRN 200
>03_05_0661 + 26532732-26532997,26533933-26534073,26535734-26535851
Length = 174
Score = 25.0 bits (52), Expect = 8.3
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +1
Query: 1 KILRITTRKTPCGEGSKTWDRFQMRI 78
KI R +K P GEG + F+MR+
Sbjct: 101 KIARAKKQKNPRGEGERGDQEFRMRL 126
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,959,808
Number of Sequences: 37544
Number of extensions: 102652
Number of successful extensions: 267
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 267
length of database: 14,793,348
effective HSP length: 53
effective length of database: 12,803,516
effective search space used: 256070320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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