Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17o14
(222 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20 pro... 124 4e-29
BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20 p... 124 4e-29
BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20 p... 124 4e-29
AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20 p... 124 4e-29
AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20 p... 108 4e-24
BC151209-1|AAI51210.1| 1493|Homo sapiens TUBGCP6 protein protein. 27 8.2
BC023573-1|AAH23573.1| 1009|Homo sapiens TUBGCP6 protein protein. 27 8.2
AL022328-10|CAI42756.1| 1819|Homo sapiens tubulin, gamma complex... 27 8.2
AF272887-1|AAK82968.1| 1819|Homo sapiens gamma-tubulin complex c... 27 8.2
AB051456-1|BAB33339.1| 1405|Homo sapiens KIAA1669 protein protein. 27 8.2
>L06498-1|AAA60286.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 124 bits (300), Expect = 4e-29
Identities = 58/61 (95%), Positives = 60/61 (98%)
Frame = +1
Query: 1 KILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 180
K LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIAD
Sbjct: 59 KTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118
Query: 181 A 183
A
Sbjct: 119 A 119
>BC087850-1|AAH87850.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 124 bits (300), Expect = 4e-29
Identities = 58/61 (95%), Positives = 60/61 (98%)
Frame = +1
Query: 1 KILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 180
K LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIAD
Sbjct: 59 KTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118
Query: 181 A 183
A
Sbjct: 119 A 119
>BC007507-1|AAH07507.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 124 bits (300), Expect = 4e-29
Identities = 58/61 (95%), Positives = 60/61 (98%)
Frame = +1
Query: 1 KILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 180
K LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIAD
Sbjct: 59 KTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118
Query: 181 A 183
A
Sbjct: 119 A 119
>AB061842-1|BAB79480.1| 119|Homo sapiens ribosomal protein S20
protein.
Length = 119
Score = 124 bits (300), Expect = 4e-29
Identities = 58/61 (95%), Positives = 60/61 (98%)
Frame = +1
Query: 1 KILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 180
K LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGVEVEVTIAD
Sbjct: 59 KTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIAD 118
Query: 181 A 183
A
Sbjct: 119 A 119
>AB007156-1|BAA25820.1| 60|Homo sapiens ribosomal protein S20
protein.
Length = 60
Score = 108 bits (259), Expect = 4e-24
Identities = 49/52 (94%), Positives = 51/52 (98%)
Frame = +1
Query: 1 KILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 156
K LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVKQITSI+IEPGV
Sbjct: 9 KTLRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGV 60
>BC151209-1|AAI51210.1| 1493|Homo sapiens TUBGCP6 protein protein.
Length = 1493
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 214 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 68
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 953 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 999
>BC023573-1|AAH23573.1| 1009|Homo sapiens TUBGCP6 protein protein.
Length = 1009
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 214 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 68
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 143 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 189
>AL022328-10|CAI42756.1| 1819|Homo sapiens tubulin, gamma complex
associated protein 6 protein.
Length = 1819
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 214 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 68
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 953 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 999
>AF272887-1|AAK82968.1| 1819|Homo sapiens gamma-tubulin complex
component protein.
Length = 1819
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 214 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 68
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 953 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 999
>AB051456-1|BAB33339.1| 1405|Homo sapiens KIAA1669 protein protein.
Length = 1405
Score = 27.5 bits (58), Expect = 8.2
Identities = 18/49 (36%), Positives = 24/49 (48%)
Frame = -3
Query: 214 FKNILLAALPTRRRWSPQPLHRARC*LR*SVSQFQRESVGRSLSCGFAS 68
F +L A+ T +P PL A C L S Q +S G+ +CG AS
Sbjct: 921 FSTVLRPAVATSP--APGPLQAAECSLGSSGLQLWEDSCGKMDACGSAS 967
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,369,277
Number of Sequences: 237096
Number of extensions: 564269
Number of successful extensions: 4730
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4716
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4725
length of database: 76,859,062
effective HSP length: 52
effective length of database: 64,530,070
effective search space used: 1355131470
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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