Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17o14
         (222 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   113   2e-26
AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9 signal...    28   0.78 
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    28   1.0  
U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical pr...    27   2.4  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   2.4  
Z93374-8|CAB07555.1|  359|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U61953-10|AAK82911.1|  613|Caenorhabditis elegans Hypothetical p...    26   4.2  
U61953-9|AAK82910.1|  748|Caenorhabditis elegans Hypothetical pr...    26   4.2  
U61953-8|AAC48078.1|  746|Caenorhabditis elegans Hypothetical pr...    26   4.2  
Z78543-2|CAB01752.1|  369|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    25   7.3  
Z46934-9|CAD18881.1|  204|Caenorhabditis elegans Hypothetical pr...    25   9.6  
AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical...    25   9.6  
AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical...    25   9.6  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  113 bits (271), Expect = 2e-26
 Identities = 48/60 (80%), Positives = 59/60 (98%)
 Frame = +1

Query: 1   KILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTIAD 180
           K+LRITTRKTPCGEGSKTWDRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV++EVT AD
Sbjct: 58  KVLRITTRKTPCGEGSKTWDRFQMRIHKRLINLHAPAEVLRQITSISIEPGVDIEVTRAD 117


>AC024761-10|AAP13759.1|  501|Caenorhabditis elegans Cop-9
           signalosome subunit protein 3 protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 0.78
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -2

Query: 218 FFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTISE 108
           FF K F G S+ +SA  +S    GSM  E +C  I+E
Sbjct: 4   FFNKLFTGASSSSSAAASSGMDLGSM--ESLCAAINE 38


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -2

Query: 221  FFFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFT 117
            + F  YF+    Y +A + +T T GS+L+ V C T
Sbjct: 956  YSFLLYFVS-LVYLTASLINTPTKGSLLLYVFCLT 989


>U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical
           protein K08B12.2b protein.
          Length = 86

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 115 FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 20
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 115 FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 20
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>Z93374-8|CAB07555.1|  359|Caenorhabditis elegans Hypothetical
           protein C06C6.5a protein.
          Length = 359

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 182 ASAMVTSTSTPGSMLIEVICFTISEGECRSITL 84
           + A+ +S+STP S+ I  +   I   +C SITL
Sbjct: 88  SEALTSSSSTPPSLPISQLPSRIIPRDCSSITL 120


>U61953-10|AAK82911.1|  613|Caenorhabditis elegans Hypothetical
           protein R08C7.10c protein.
          Length = 613

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 218 FFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTIS 111
           + +K  +GG   +  M   + TP S++IE + F  S
Sbjct: 352 YIEKQEVGGQKVSFDMRKESLTPSSLIIEALVFICS 387


>U61953-9|AAK82910.1|  748|Caenorhabditis elegans Hypothetical
           protein R08C7.10b protein.
          Length = 748

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 218 FFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTIS 111
           + +K  +GG   +  M   + TP S++IE + F  S
Sbjct: 354 YIEKQEVGGQKVSFDMRKESLTPSSLIIEALVFICS 389


>U61953-8|AAC48078.1|  746|Caenorhabditis elegans Hypothetical
           protein R08C7.10a protein.
          Length = 746

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = -2

Query: 218 FFQKYFIGGSAYASAMVTSTSTPGSMLIEVICFTIS 111
           + +K  +GG   +  M   + TP S++IE + F  S
Sbjct: 352 YIEKQEVGGQKVSFDMRKESLTPSSLIIEALVFICS 387


>Z78543-2|CAB01752.1|  369|Caenorhabditis elegans Hypothetical
           protein F29G6.2 protein.
          Length = 369

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -3

Query: 133 R*SVSQFQRESVGRSLSCGFASENDPRS-LNLHHK 32
           R +++QF+ E +G  +   F++END  S L  H K
Sbjct: 122 RQTIAQFEVEKMGGPVRNSFSTENDEVSKLEAHEK 156


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 11/45 (24%), Positives = 21/45 (46%)
 Frame = +1

Query: 10  RITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINI 144
           RI +R  PC   S    R +  + + ++  H P  +++ + S  I
Sbjct: 328 RILSRYAPCDISSDYSPRMEKLLKEELMPAHDPEFLIELVESATI 372


>Z46934-9|CAD18881.1|  204|Caenorhabditis elegans Hypothetical
           protein ZK1320.11 protein.
          Length = 204

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = -2

Query: 146 SMLIEVICFTISEGECRSITLLWIR 72
           S L+EVICF +S  +   +  +W++
Sbjct: 98  SSLMEVICFGLSSKQAVQVIDIWMK 122


>AC006607-11|AAN63459.1| 1080|Caenorhabditis elegans Hypothetical
           protein C09E7.8b protein.
          Length = 1080

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 91  IDLHSPSEIVKQITSINIEPGV 156
           I L     +VK++TS+N +PGV
Sbjct: 861 IKLRKAEAMVKKLTSLNRDPGV 882


>AC006607-10|AAN63458.1| 1114|Caenorhabditis elegans Hypothetical
           protein C09E7.8a protein.
          Length = 1114

 Score = 24.6 bits (51), Expect = 9.6
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 91  IDLHSPSEIVKQITSINIEPGV 156
           I L     +VK++TS+N +PGV
Sbjct: 895 IKLRKAEAMVKKLTSLNRDPGV 916


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,963,850
Number of Sequences: 27780
Number of extensions: 82989
Number of successful extensions: 192
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,740,198
effective HSP length: 53
effective length of database: 11,267,858
effective search space used: 225357160
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)