Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17o08
         (581 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0310 + 7315185-7316820,7318332-7318879                           30   1.5  
12_01_0977 - 9900073-9900521,9900594-9900698,9900770-9900959,990...    29   2.0  
12_02_0134 - 14071190-14071435,14071800-14071988,14072114-140721...    29   3.6  
01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688     28   4.7  
02_02_0583 + 11813372-11813738,11823130-11823209,11823357-118235...    28   6.2  
09_03_0025 - 11665969-11666417,11666490-11666594,11666667-116668...    27   8.2  

>03_02_0310 + 7315185-7316820,7318332-7318879
          Length = 727

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 2/41 (4%)
 Frame = +1

Query: 199 RSDDMTPVVT-TITPKRTA-DYKITEYVSDVKTIKPSNRPL 315
           +S DM  + T TITP +++ ++K T  + D   +KPS +PL
Sbjct: 568 QSTDMRSLQTPTITPPKSSFNFKTTTSILDTDALKPSPKPL 608


>12_01_0977 -
           9900073-9900521,9900594-9900698,9900770-9900959,
           9901035-9901093,9901297-9901688,9901770-9902059,
           9902146-9903030
          Length = 789

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +2

Query: 338 KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 487
           K+     D   NV +PL+ A  L+      +D  +  DKL + P   F N
Sbjct: 658 KRLEGARDEVANVATPLVQAMFLNNSGPSALDATEIFDKLRVAPDVYFKN 707


>12_02_0134 - 14071190-14071435,14071800-14071988,14072114-14072194,
            14072261-14072404,14072528-14072761,14072836-14073981,
            14074863-14074922,14075178-14075420,14075509-14075607,
            14076196-14076367,14076597-14076735,14077514-14077624,
            14077695-14077797,14077885-14077962,14078054-14078122,
            14078203-14078275,14078891-14078975,14079473-14079536,
            14079963-14080073,14080139-14080213,14080306-14080398,
            14080982-14081056,14081172-14081261
          Length = 1259

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = +1

Query: 184  CNKFLRSDDMTPVVTTITPKRTADYKITEYVSDVKT 291
            C  FLRS ++ PV+  +  +++ D  I+EY S + T
Sbjct: 1221 CRLFLRSSELLPVIVHL--RQSPDPAISEYASAIAT 1254


>01_06_1523 + 37976184-37976633,37977757-37977884,37978541-37978688
          Length = 241

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
 Frame = -2

Query: 247 FFWA*SLSLRGSCHRCVETCYNQNSCLN-ACTYRARYVASYLV 122
           F W  S  LR S    VE C NQ  CL  A   +++ V  YL+
Sbjct: 188 FCWL-SCILRSSSEEFVEQCINQAECLTLAVRKQSKGVGGYLI 229


>02_02_0583 +
           11813372-11813738,11823130-11823209,11823357-11823507,
           11832674-11832778,11832831-11833282
          Length = 384

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 14/50 (28%), Positives = 20/50 (40%)
 Frame = +2

Query: 338 KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 487
           K+     D   N  +PL+ A   +       D  +  DKL + P T F N
Sbjct: 252 KRLEGARDEVANAATPLVQAMFFNNNGPSTFDASEIFDKLRVAPDTYFKN 301


>09_03_0025 -
           11665969-11666417,11666490-11666594,11666667-11666856,
           11666933-11667120,11667240-11667571,11667654-11667940,
           11668027-11668911
          Length = 811

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/50 (28%), Positives = 22/50 (44%)
 Frame = +2

Query: 338 KKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVFYN 487
           K+     D   N  +P+I A  L+      +D  +  DKL++ P   F N
Sbjct: 680 KRLEGARDDVANAAAPIIQAMFLNNGGPSALDATEIFDKLSVAPEVYFKN 729


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,523,359
Number of Sequences: 37544
Number of extensions: 270976
Number of successful extensions: 699
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)