Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17o08
(581 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6
SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.1
SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4) 29 3.7
SB_41817| Best HMM Match : DUF773 (HMM E-Value=0.6) 28 4.8
SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81) 28 4.8
SB_12802| Best HMM Match : Aldedh (HMM E-Value=0) 28 4.8
SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_41554| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_39608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.4
SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25) 27 8.5
>SB_48387| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 941
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/98 (20%), Positives = 48/98 (48%), Gaps = 4/98 (4%)
Frame = +1
Query: 58 KINNARVVASQHDYDRDQIKRELNSLRRNVHDMCTRSGTSF-DCNKFL--RSDDMTPVVT 228
K+N ++ +H+ +++ I +E L+ +H M +S S D L + ++T V+
Sbjct: 281 KVNEITDMSERHNREKELILKEQQQLQDEMHKMRQKSKASIHDIENILNDKEKNLTDVMN 340
Query: 229 TITPKRTADYKI-TEYVSDVKTIKPSNRPLVESGPLVQ 339
+ ++ ++ + V K + N+ L+E+ L++
Sbjct: 341 NLKEEQAQRKQLEKQLVDSSKKFEKENQILMEADELIK 378
>SB_26250| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 292
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = -3
Query: 573 LEFLIALIVGGAVNSMYNRSPEILTKTP 490
L+ L+ V G VN +YNR +L KTP
Sbjct: 5 LKILVCGDVNGKVNQLYNRVETVLKKTP 32
>SB_52096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 997
Score = 28.7 bits (61), Expect = 3.7
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 10/58 (17%)
Frame = +1
Query: 40 IMYSTSKINNARVVA------SQHD----YDRDQIKRELNSLRRNVHDMCTRSGTSFD 183
++Y+ K +NA VA SQ+ + R+++ +L+ + +++HD C + GT D
Sbjct: 690 VLYAPGKASNAGGVAVSGLEMSQNSLRGAWTREEVDEKLSGIMKSIHDTCVQYGTCKD 747
>SB_41532| Best HMM Match : Extensin_2 (HMM E-Value=1.4)
Length = 1633
Score = 28.7 bits (61), Expect = 3.7
Identities = 15/52 (28%), Positives = 24/52 (46%)
Frame = +1
Query: 136 RRNVHDMCTRSGTSFDCNKFLRSDDMTPVVTTITPKRTADYKITEYVSDVKT 291
R N +D C S F+ + R +++ +T DY++ E S VKT
Sbjct: 77 RHNFNDFCVSSFEEFENDVCYRFEEVFRKKDKVTHYEKDDYEVEEKASTVKT 128
>SB_41817| Best HMM Match : DUF773 (HMM E-Value=0.6)
Length = 653
Score = 28.3 bits (60), Expect = 4.8
Identities = 16/57 (28%), Positives = 29/57 (50%)
Frame = +1
Query: 109 QIKRELNSLRRNVHDMCTRSGTSFDCNKFLRSDDMTPVVTTITPKRTADYKITEYVS 279
+IK L+S + + S T F C++F+ D M PV++ + ++ + YVS
Sbjct: 331 RIKESLSSSTTS-SSTSSASTTVFHCDQFIPEDGMEPVLSRLMTHQSEKVTSSAYVS 386
>SB_29160| Best HMM Match : E-MAP-115 (HMM E-Value=0.81)
Length = 196
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 79 VASQHDYDRDQIKRELNSLRRNVHD 153
++S+H+ ++D+I+ ELN RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154
>SB_12802| Best HMM Match : Aldedh (HMM E-Value=0)
Length = 880
Score = 28.3 bits (60), Expect = 4.8
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 7/70 (10%)
Frame = -3
Query: 420 VAFLSKHDALMRGLHTLYG-ASAIFRGFLHQRSR-FD*RSIG--WLNSFNVTDV---LGN 262
+ F ++ +A+ R +T +G A IF L++ R G W+NSFN+T V G
Sbjct: 663 LTFQTEEEAVTRANNTTFGLAGGIFTRDLNRAHRVIGSLQAGTCWINSFNITPVEVPFGG 722
Query: 261 FVVGSSFGRD 232
+ + S FGR+
Sbjct: 723 YKM-SGFGRE 731
>SB_328| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 334
Score = 28.3 bits (60), Expect = 4.8
Identities = 9/25 (36%), Positives = 19/25 (76%)
Frame = +1
Query: 79 VASQHDYDRDQIKRELNSLRRNVHD 153
++S+H+ ++D+I+ ELN RR + +
Sbjct: 130 MSSKHNQEKDEIREELNETRRKLEE 154
>SB_41554| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 238 PKRTADYKITEYVSDVKTIKPSNRPLVESGPLVQE 342
P D+ I +YV D+K K + P+ E ++QE
Sbjct: 122 PLFNKDWSIQQYVKDLKGFKQAMGPVAEVDAVIQE 156
>SB_39608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 201
Score = 27.9 bits (59), Expect = 6.4
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +1
Query: 238 PKRTADYKITEYVSDVKTIKPSNRPLVESGPLVQE 342
P D+ I +YV D+K K + P+ E ++QE
Sbjct: 122 PLFNKDWSIQQYVKDLKGFKQAMGPVAEVDAVIQE 156
>SB_33342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1189
Score = 27.9 bits (59), Expect = 6.4
Identities = 22/86 (25%), Positives = 39/86 (45%)
Frame = +2
Query: 248 LPTTKLPSTSVTLKLLSHPIDR*SNRDRWCKKPRNMADAPYNVWSPLISASCLDKKATYL 427
LPTT+LP+T+ T + P +P+ D P NV + IS S + + T++
Sbjct: 476 LPTTRLPTTAQTPTTILPPTTT-PTPPPTTTEPQRPPDPPRNVQARTISDS--EIEVTWI 532
Query: 428 IDPDDFIDKLTLTPYTVFYNGGVLVK 505
+ + L+ + GG++ K
Sbjct: 533 PPKNTYGKVLSYNMFFTLSKGGIVPK 558
>SB_34678| Best HMM Match : Bromodomain (HMM E-Value=9e-25)
Length = 1137
Score = 27.5 bits (58), Expect = 8.5
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Frame = +1
Query: 187 NKFLRSDDMTPVVTTITPKRTADY-KITEYVSDVKTIKPSNRPLVE 321
NK D+ P T + PK DY KI + D++T++ ++
Sbjct: 756 NKMKEVDESWPFHTPVNPKTVPDYHKIVKNPIDLQTLREKEEEFIQ 801
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,340,699
Number of Sequences: 59808
Number of extensions: 335647
Number of successful extensions: 778
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 747
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 778
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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