Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17o08
         (581 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               24   1.3  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   3.8  
AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.     22   3.8  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.1  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   6.7  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = -2

Query: 226 SLRGSCHRCVETCYNQNSCLNACTYRARYVASYL 125
           S+R    +CV+   N++ CL A  + +R V  Y+
Sbjct: 93  SIRKIIRQCVDNAKNEDKCLTAQKF-SRCVIDYV 125


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = +1

Query: 454 IDPNSIHGILQWRGF 498
           + P S+HG L WR F
Sbjct: 298 VPPLSLHGQLLWREF 312


>AB194707-1|BAD69622.1|  247|Apis mellifera heme oxygenase protein.
          Length = 247

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 17/55 (30%), Positives = 27/55 (49%)
 Frame = +2

Query: 317 SNRDRWCKKPRNMADAPYNVWSPLISASCLDKKATYLIDPDDFIDKLTLTPYTVF 481
           +N+D +CKK R      +++   L++A    K A   +D   + D L L  Y VF
Sbjct: 4   NNQDTFCKKMRKATKEIHSISDSLVNA----KLAFGFLDNSVWADGL-LVFYEVF 53


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +2

Query: 347 RNMADAPYNVWSPLISASCLDKKATYL 427
           R++  A   V +PLIS   L  K TY+
Sbjct: 115 RSLLSADVAVATPLISMGALLGKTTYM 141


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -1

Query: 71  ALLIFDVLYIIYYWI 27
           A +IF++LY  + WI
Sbjct: 455 AFIIFNILYWSFIWI 469


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,810
Number of Sequences: 438
Number of extensions: 3149
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)