Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17n23
(272 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1 |Schiz... 26 0.83
SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces ... 25 1.9
SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces pomb... 24 3.4
SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit S8|S... 24 3.4
SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomy... 24 3.4
SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr ... 23 5.9
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 23 5.9
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 23 5.9
SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomy... 23 5.9
SPBC3B9.15c |scp1||sterol regulatory element binding protein Scp... 23 5.9
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 23 5.9
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po... 23 7.8
SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit Cpp... 23 7.8
SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit Vps23|Schizosac... 23 7.8
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy... 23 7.8
>SPAC22H10.12c |gdi1|sec19|GDP dissociation inhibitor Gdi1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 26.2 bits (55), Expect = 0.83
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +1
Query: 13 RSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHN 138
RS+ RL + + + +PN N L+ V+ +P+NQ K KH+
Sbjct: 292 RSVGRLVRAICILNHP-IPNTDN-LDSVQIIIPQNQVKRKHD 331
>SPCC663.11 |||ww domain binding protein 11 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 278
Score = 25.0 bits (52), Expect = 1.9
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = +3
Query: 102 NAASKPVQSQAQQDHAVAKLDSRTAHRCRAVEHDGTSD 215
NA K + Q+D A+ K + HR VE D T +
Sbjct: 62 NAHDKQLLQNLQRDMAIMKKKNIHGHRVGRVESDKTKE 99
>SPAC1F7.03 |pkd2||TRP-like ion channel |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 710
Score = 24.2 bits (50), Expect = 3.4
Identities = 16/65 (24%), Positives = 30/65 (46%)
Frame = +1
Query: 4 SLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLID 183
S N+SIK + SSD+ F SD + + + V P + +++ + N D
Sbjct: 604 SYNKSIKDMSSSDMAF-SDPAYSGTTLRSSVDLNTPEYPFSNRNDSDSTFTNNKYVSPWD 662
Query: 184 AVQSS 198
A++ +
Sbjct: 663 AIEEA 667
>SPCC736.10c |mrps8||mitochondrial ribosomal protein subunit
S8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 152
Score = 24.2 bits (50), Expect = 3.4
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -1
Query: 185 ASMSCSRVKFCNSVILLCLALY 120
A S + V CNSV+ LC LY
Sbjct: 16 ARKSLASVPNCNSVLELCAVLY 37
>SPAC139.01c ||SPAC955.02c|nuclease, XP-G family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 24.2 bits (50), Expect = 3.4
Identities = 18/39 (46%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = -2
Query: 265 FGIKYFITS*NCYSIVQ--SDVPSCSTARHR*AVLESSF 155
FG+K FITS N S V+ SD S ST + +SSF
Sbjct: 205 FGVKKFITSMNTSSNVKISSDPSSPSTQTTINSAAKSSF 243
>SPAC2F3.11 |||exopolyphosphatase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 384
Score = 23.4 bits (48), Expect = 5.9
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 195 RLHGIDELFSSQVLQQRDLVVLGFVLVSRQRF 100
RL DEL S +Q DLV++G L F
Sbjct: 283 RLGWEDELKSFAEVQNSDLVIVGLSLSKNDEF 314
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 23.4 bits (48), Expect = 5.9
Identities = 15/61 (24%), Positives = 24/61 (39%)
Frame = +1
Query: 4 SLNRSIKRLGSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLID 183
SLN + S + Y+ M +K+ + + +KA LL N Q I+
Sbjct: 626 SLNHCKSLISSDNAAILGTYIDELMRHQPSLKDPIVKMIFKACDQVSALLDNFNPFQYIN 685
Query: 184 A 186
A
Sbjct: 686 A 686
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = +1
Query: 70 NAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTER 210
N ++ + +T R+ + H K+ L+N R + V++ +R
Sbjct: 237 NGTGFVHAIMDTF-RHHVRRTHGKVIKLENCIRRTALQTVKNKYAQR 282
>SPBC1271.05c |||zinc finger protein zf-AN1 type|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 215
Score = 23.4 bits (48), Expect = 5.9
Identities = 7/11 (63%), Positives = 10/11 (90%)
Frame = +2
Query: 122 TKPSTTRSRCC 154
T+P+T+R RCC
Sbjct: 141 TRPATSRRRCC 151
>SPBC3B9.15c |scp1||sterol regulatory element binding protein
Scp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1086
Score = 23.4 bits (48), Expect = 5.9
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +1
Query: 7 LNRSIKRLGSSDVVFSSDYVPNA 75
+ + + LG++ VFS DY+ NA
Sbjct: 84 ITKQLYLLGTNTSVFSEDYLSNA 106
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1919
Score = 23.4 bits (48), Expect = 5.9
Identities = 10/47 (21%), Positives = 22/47 (46%)
Frame = +1
Query: 70 NAMNVLNKVKETLPRNQYKAKHNKITLLQNLTREQLIDAVQSSMTER 210
N ++ + +T R+ + H K+ L+N R + V++ +R
Sbjct: 237 NGTGFVHAIMDTF-RHHVRRTHGKVIKLENCIRRTALQTVKNKYAQR 282
>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 2812
Score = 23.0 bits (47), Expect = 7.8
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +2
Query: 104 RCLETSTKPSTTRSRCCKT*LENS 175
+CL S + SRCC L NS
Sbjct: 2256 KCLSESDENDVLISRCCTMWLSNS 2279
>SPAC17G6.04c |cpp1||protein farnesyltransferase beta subunit
Cpp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 382
Score = 23.0 bits (47), Expect = 7.8
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 183 IDELFSSQVLQQRDLVVLGFVLVSRQRFFNFVKHV 79
+DEL +QV+Q + +L + FN KH+
Sbjct: 1 MDELSETQVMQNETATAVLPLLNGESQSFNLQKHL 35
>SPAC11H11.01 |sst6|cps23|ESCRT I complex subunit
Vps23|Schizosaccharomyces pombe|chr 1|||Manual
Length = 487
Score = 23.0 bits (47), Expect = 7.8
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 4/55 (7%)
Frame = +1
Query: 31 GSSDVVFSSDYVPNAMNVLNKVKETLPRNQYKAKH---NKITLLQNL-TREQLID 183
GSS++++S D+ PN V K+++ L + + ++I + +NL +++L+D
Sbjct: 326 GSSELLYSEDFKPNVDPV--KIQQILHKQNKIIEEKWISQIRISKNLEVKQRLLD 378
>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 318
Score = 23.0 bits (47), Expect = 7.8
Identities = 9/22 (40%), Positives = 15/22 (68%)
Frame = +1
Query: 112 RNQYKAKHNKITLLQNLTREQL 177
+N+ AKH K+T LQ +++L
Sbjct: 76 KNKGDAKHTKLTSLQQKMKDKL 97
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.312 0.125 0.324
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,027,074
Number of Sequences: 5004
Number of extensions: 16827
Number of successful extensions: 55
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 59659786
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
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