Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17n18
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical pr...    31   0.90 
Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical p...    30   1.2  
U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.2  
U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.       30   1.2  
Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical p...    29   2.7  
U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical pr...    29   3.6  
AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical p...    28   6.3  
Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical ...    28   6.3  
AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical ...    28   6.3  
AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical...    27   8.4  

>Z81052-3|CAB02871.1|  160|Caenorhabditis elegans Hypothetical
           protein D2023.4 protein.
          Length = 160

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +1

Query: 481 NSDEKIQKTYELAEFDLKNLSSLESYETLKN*IGAQQIHGYAQHPGNDP 627
           ++++ I   +ELAEF+    S + + E L+  I  + +HG+    G +P
Sbjct: 13  HAEQLISMIHELAEFEKMKSSVVNTAEKLRKDIENKAVHGFIAFIGEEP 61


>Z73971-10|CAA98251.1|  838|Caenorhabditis elegans Hypothetical
           protein C50H2.3 protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 136 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 258
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33934-1|AAA96507.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 136 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 258
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>U33933-1|AAA96506.1|  838|Caenorhabditis elegans MEC-9L protein.
          Length = 838

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +1

Query: 136 WRYD*HRCAVRKLFKQANSKHVFDHFGCSSNYCFNNYVCSI 258
           W+ D H C  +  F   N   V D+  C+   C N   C I
Sbjct: 568 WKKDTHYCKCQPGFHGNNCDKVVDYDPCAEKPCLNGATCQI 608


>Z22176-11|CAA80141.1|  784|Caenorhabditis elegans Hypothetical
           protein ZK1098.3 protein.
          Length = 784

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/60 (26%), Positives = 32/60 (53%)
 Frame = +1

Query: 331 SKRDRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSDEKIQKTY 510
           SK   + E+ K   A+  + +H    +   + I +  + C+KV+ V E++   +K+QK+Y
Sbjct: 168 SKVQEYLENQKFKEAAEIVMKHEVVDDYSFEQITLPLILCDKVQIVDELLKISKKLQKSY 227


>U41026-1|AAM51522.2|  101|Caenorhabditis elegans Hypothetical
           protein C28G1.5 protein.
          Length = 101

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 19/62 (30%), Positives = 28/62 (45%), Gaps = 1/62 (1%)
 Frame = +1

Query: 340 DRFYESFKRYHAS*SLYEHASKANVVDKCIKMKRVKCNKVRTVTEIVNSD-EKIQKTYEL 516
           DRF ++   +        HA     +   +    V+C   RTVT IVN+D  K+ K + L
Sbjct: 11  DRFSDTDSEHIPRNLTCGHALCHKCITAMVNNSTVECPFCRTVTNIVNNDITKLLKNFAL 70

Query: 517 AE 522
            E
Sbjct: 71  IE 72


>AL021446-1|CAA16265.1|  398|Caenorhabditis elegans Hypothetical
           protein F14F4.1 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 157 CAVRKLFKQANSKHVFDHFGCSSNYCFNN 243
           C  R+ F +   K  F++F CSS    NN
Sbjct: 336 CRSRRSFTEVTKKRSFENFECSSTATMNN 364


>Z81494-14|CAJ43905.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 442 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 561
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>Z81494-8|CAB54212.3|  707|Caenorhabditis elegans Hypothetical
           protein F02E9.9a protein.
          Length = 707

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 442 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 561
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 120 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 158


>Z81057-7|CAJ43903.2|  745|Caenorhabditis elegans Hypothetical
           protein F02E9.9b protein.
          Length = 745

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/42 (42%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +1

Query: 442 VKCNKVRTVTE--IVNSDEKIQKTYELAEFDLKNLSSLESYE 561
           V+  K+R + E   V +DEK+ KT+E  E   K + SLES E
Sbjct: 158 VEQTKIRALLEKSAVGTDEKVMKTWESVE---KVIGSLESNE 196


>AF039038-8|AAM81097.1|  874|Caenorhabditis elegans Hypothetical
           protein K06A5.8a protein.
          Length = 874

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 547 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 446
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AF039038-7|AAM81098.1|  942|Caenorhabditis elegans Hypothetical
           protein K06A5.8b protein.
          Length = 942

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -2

Query: 547 NCLDFLNQIRPIRRF-FGSFHRCLQFR*PFELCCI 446
           N LDF+  ++P+  F FG+F   +     FEL C+
Sbjct: 80  NALDFVEPLKPVNEFDFGAFRYNITKYKFFELLCV 114


>AC024751-13|AAK21512.2|  488|Caenorhabditis elegans Hypothetical
           protein Y18H1A.9 protein.
          Length = 488

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = -2

Query: 580 QFNFSEFHSFLNCLDFLNQI 521
           QFN +++HSF + +++LN +
Sbjct: 119 QFNLAQYHSFADVINYLNSL 138


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,748,301
Number of Sequences: 27780
Number of extensions: 210155
Number of successful extensions: 582
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 569
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 582
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)