Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m23
         (407 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces pombe...    27   1.1  
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    25   4.5  
SPAC26H5.06 |pot1||telomere end-binding protein Pot1 |Schizosacc...    25   4.5  
SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase |Schizosac...    25   4.5  
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ...    25   4.5  

>SPBC3E7.09 |||Sad1-UNC-like C-terminal|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 659

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
 Frame = +3

Query: 189 ATVISLALTTVVIGNAYYQKKQFYP--SIVYLTNXNPSMAVMYLXAFI 326
           +TVIS +L+TVVIGN    K + YP  S     + +PS +  Y  A I
Sbjct: 401 STVISKSLSTVVIGNE-TGKSESYPATSTRSFNDISPSSSSSYSTAQI 447


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +3

Query: 180 AVLATVISLALTTVVIGNAYYQKKQ 254
           +VLAT++S A T ++IG+  Y  ++
Sbjct: 238 SVLATLLSFAPTLLIIGSVIYLSRR 262


>SPAC26H5.06 |pot1||telomere end-binding protein Pot1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 555

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 13/46 (28%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +2

Query: 164 NYQNEGS--VSDGDQSRANHCGYRQCILPKETVLPFDSLFNKXKSK 295
           NY  EG   V    +++ +H GY +CIL  ++   ++    K  S+
Sbjct: 277 NYIKEGDYVVMKNVRTKIDHLGYLECILHGDSAKRYNMSIEKVDSE 322


>SPCC1902.02 |mug72|SPCC663.16c|ketopantoate reductase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 574

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +3

Query: 255 FYPSIVYLTNXNPSMAVMYLXAFILVLLVGKMLRKIXFGQLRPAEFE 395
           FYP  + + N  P++A+MY       ++ G M       Q +  EFE
Sbjct: 221 FYP--LSIINDEPNLALMYRLKSFAKVIDGLMDEAFSIAQAQGCEFE 265


>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
           Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 497

 Score = 25.0 bits (52), Expect = 4.5
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +3

Query: 189 ATVISLALTTVVIGNAYYQKKQFYPSIVYLTNXNPSMAVMY 311
           A V++L L   +  N Y Q  +      +LTN + ++A+ Y
Sbjct: 210 AMVLTLLLRNYIQFNLYDQADRLVSKTSFLTNASNNLAIRY 250


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,434,330
Number of Sequences: 5004
Number of extensions: 24046
Number of successful extensions: 63
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)