Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m23
         (407 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0066 - 11081446-11081544,11081639-11081846,11083122-110832...    39   0.001
11_01_0432 + 3313060-3313107,3313610-3313753,3314510-3314662,331...    30   0.62 

>06_02_0066 -
           11081446-11081544,11081639-11081846,11083122-11083257,
           11083339-11083541,11083616-11083765,11083848-11083964,
           11084623-11085119
          Length = 469

 Score = 39.1 bits (87), Expect = 0.001
 Identities = 16/63 (25%), Positives = 34/63 (53%)
 Frame = +3

Query: 213 TTVVIGNAYYQKKQFYPSIVYLTNXNPSMAVMYLXAFILVLLVGKMLRKIXFGQLRPAEF 392
           T   +  A+  ++QFYP++VYL+       ++     + + +  ++++++  G LR AE 
Sbjct: 3   TATAVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQLVKRLFLGTLREAEV 62

Query: 393 EHL 401
           E L
Sbjct: 63  ERL 65


>11_01_0432 +
           3313060-3313107,3313610-3313753,3314510-3314662,
           3315283-3315792,3315888-3317423,3317505-3317573,
           3317742-3317807,3318517-3318640,3319464-3319690
          Length = 958

 Score = 30.3 bits (65), Expect = 0.62
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +2

Query: 185 VSDGDQSRANHCGYRQCILPKETVLPFDSLFNKXKSKHGSDVFAXVYFSFIGGKNAKE 358
           VS   Q+ + H       +P +  +PF+ +F+K + K  + +      SF+ G N+ E
Sbjct: 362 VSKNPQTPSKHSEATVKRIPLDIKVPFEKVFSKEEPKSRTSMLPESIMSFVSGWNSAE 419


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,241,969
Number of Sequences: 37544
Number of extensions: 126438
Number of successful extensions: 233
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 233
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)