Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m23
         (407 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060677-1|AAL28225.1|  626|Drosophila melanogaster GH11117p pro...    93   1e-19
AE014297-4807|AAF57196.2|  626|Drosophila melanogaster CG1937-PA...    93   1e-19
BT015965-1|AAV36850.1|  525|Drosophila melanogaster RH39295p pro...    29   3.1  
AY060623-1|AAL28171.1|  407|Drosophila melanogaster GH04611p pro...    29   3.1  
AF342988-1|AAL73340.1|  525|Drosophila melanogaster KAL-1 protein.     29   3.1  
AE014297-3467|AAF56243.2|  525|Drosophila melanogaster CG6173-PA...    29   3.1  

>AY060677-1|AAL28225.1|  626|Drosophila melanogaster GH11117p
           protein.
          Length = 626

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 40/75 (53%), Positives = 57/75 (76%)
 Frame = +3

Query: 183 VLATVISLALTTVVIGNAYYQKKQFYPSIVYLTNXNPSMAVMYLXAFILVLLVGKMLRKI 362
           +L + + +ALT+ VIG AYYQK+QFYP++VY+T  N SM V+Y+  F++V + GK+L KI
Sbjct: 3   LLLSSVCMALTSAVIGFAYYQKQQFYPAVVYITKSNASMGVIYIQFFVIVFMFGKLLSKI 62

Query: 363 XFGQLRPAEFEHLIQ 407
             G LR AEFEHL++
Sbjct: 63  FLGTLRAAEFEHLLE 77


>AE014297-4807|AAF57196.2|  626|Drosophila melanogaster CG1937-PA
           protein.
          Length = 626

 Score = 93.1 bits (221), Expect = 1e-19
 Identities = 40/75 (53%), Positives = 57/75 (76%)
 Frame = +3

Query: 183 VLATVISLALTTVVIGNAYYQKKQFYPSIVYLTNXNPSMAVMYLXAFILVLLVGKMLRKI 362
           +L + + +ALT+ VIG AYYQK+QFYP++VY+T  N SM V+Y+  F++V + GK+L KI
Sbjct: 3   LLLSSVCMALTSAVIGFAYYQKQQFYPAVVYITKSNASMGVIYIQFFVIVFMFGKLLSKI 62

Query: 363 XFGQLRPAEFEHLIQ 407
             G LR AEFEHL++
Sbjct: 63  FLGTLRAAEFEHLLE 77


>BT015965-1|AAV36850.1|  525|Drosophila melanogaster RH39295p
           protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 187 NTAFILIVXRSSXEMISSCASLIKFLCTPKYI*FLKTFSKHHIVCS 50
           NT ++L + RSS   +   +  +    TPK   F K F K  I CS
Sbjct: 479 NTTYVLRIPRSSPNSVLDDSRNVFTFTTPKCENFRKRFPKLQIKCS 524


>AY060623-1|AAL28171.1|  407|Drosophila melanogaster GH04611p
           protein.
          Length = 407

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 187 NTAFILIVXRSSXEMISSCASLIKFLCTPKYI*FLKTFSKHHIVCS 50
           NT ++L + RSS   +   +  +    TPK   F K F K  I CS
Sbjct: 361 NTTYVLRIPRSSPNSVLDDSRNVFTFTTPKCENFRKRFPKLQIKCS 406


>AF342988-1|AAL73340.1|  525|Drosophila melanogaster KAL-1 protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 187 NTAFILIVXRSSXEMISSCASLIKFLCTPKYI*FLKTFSKHHIVCS 50
           NT ++L + RSS   +   +  +    TPK   F K F K  I CS
Sbjct: 479 NTTYVLRIPRSSPNSVLDDSRNVFTFTTPKCENFRKRFPKLQIKCS 524


>AE014297-3467|AAF56243.2|  525|Drosophila melanogaster CG6173-PA
           protein.
          Length = 525

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 16/46 (34%), Positives = 22/46 (47%)
 Frame = -2

Query: 187 NTAFILIVXRSSXEMISSCASLIKFLCTPKYI*FLKTFSKHHIVCS 50
           NT ++L + RSS   +   +  +    TPK   F K F K  I CS
Sbjct: 479 NTTYVLRIPRSSPNSVLDDSRNVFTFTTPKCENFRKRFPKLQIKCS 524


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,343,633
Number of Sequences: 53049
Number of extensions: 231530
Number of successful extensions: 402
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 402
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1188481122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)