Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17m21
(554 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces pomb... 28 1.1
SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces p... 27 1.9
SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyc... 27 1.9
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 27 1.9
SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces po... 26 3.2
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 26 3.2
SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyce... 26 4.3
SPAPB1A11.04c |||transcription factor |Schizosaccharomyces pombe... 26 4.3
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 25 5.7
SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr ... 25 5.7
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 25 7.5
SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces p... 25 7.5
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 9.9
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo... 25 9.9
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 25 9.9
>SPAC3H1.10 |||phytochelatin synthetase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 414
Score = 27.9 bits (59), Expect = 1.1
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 5/74 (6%)
Frame = +2
Query: 23 TMNFWATFSICLVGYLVYAGHLNNELQEIKSIL-VVMYESMEKHFSNVVDEIDSL----K 187
TM FWA FS+ ++ + G L+EI+S+L V + + + ++DSL K
Sbjct: 345 TMAFWAIFSLPMIQKALPKG----VLEEIQSLLKEVEISEINTQLTALKKQLDSLTHCCK 400
Query: 188 TDTFMMLSNLQNNT 229
TDT S+ NT
Sbjct: 401 TDTGCCSSSCCKNT 414
>SPBP23A10.06 |||manganese ion transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/26 (50%), Positives = 16/26 (61%)
Frame = -3
Query: 372 YINLVISSVY*TLSRLLTTPFFVNST 295
YIN V + TL+ LLT PF V+ T
Sbjct: 247 YINFVSGGISGTLATLLTQPFDVSKT 272
>SPBC2D10.17 |clr1||cryptic loci regulator Clr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1238
Score = 27.1 bits (57), Expect = 1.9
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -3
Query: 189 VLRESISS-TTLEKCFSIDSYMTTSIDFISCSSLFKCPAYTK*PTKQ 52
+ ++S+SS TTL K S SY+ T+ + + +S FK T P +
Sbjct: 544 IQQKSVSSETTLVKPSSTSSYIDTTNNVLKTNSSFKSSGLTSGPRNE 590
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 27.1 bits (57), Expect = 1.9
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = -2
Query: 253 YNCVPRSNRVILQVAQHHKRVRFKRINFVYHIGKMFF----HRFVHDH 122
Y V R+ R++ V H N +YH GK++F HDH
Sbjct: 269 YQLVARNMRILFHVC-HLVHADLSEYNLLYHKGKVYFIDVSQSVEHDH 315
>SPAC56E4.05 |mug69||DUF788 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 192
Score = 26.2 bits (55), Expect = 3.2
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Frame = +2
Query: 458 RHGLH-LSKFKNAFASVSTTFVHHPI 532
R GL SKF AFAS+S+ F+H+ +
Sbjct: 39 RSGLSKFSKFVYAFASISSGFLHYQL 64
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 176 DSLKTDTFMMLSNLQNNTIRTWDAVVKNGKKI 271
D K+ T +M+S +NT+R WD VK GK++
Sbjct: 59 DINKSST-LMVSGAADNTMRLWD--VKTGKQL 87
>SPCC4B3.07 |||nuclear pore associated protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 393
Score = 25.8 bits (54), Expect = 4.3
Identities = 9/40 (22%), Positives = 22/40 (55%)
Frame = +2
Query: 131 YESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAV 250
Y + +++ +++D +S D S+ NN++ TW+ +
Sbjct: 290 YTTFAEYYMDLLDNSESNVDDLINKASSWLNNSVDTWNVI 329
>SPAPB1A11.04c |||transcription factor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 697
Score = 25.8 bits (54), Expect = 4.3
Identities = 14/29 (48%), Positives = 18/29 (62%)
Frame = -2
Query: 262 AIFYNCVPRSNRVILQVAQHHKRVRFKRI 176
A+ + VPR RVI QV+Q R R K+I
Sbjct: 4 AVEKDAVPRKRRVISQVSQACIRCRQKKI 32
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 5.7
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +2
Query: 77 AGHLNNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTIRTWDAVVK 256
+G + + +Q + +YE+ ++ N ++ L+ ++++QN D V
Sbjct: 143 SGGIESSIQNLDPYAQSLYETAKQLLQNADTDLSKLEKTCVQYMNSVQNFPT---DIPVP 199
Query: 257 NGKKISNLD 283
+ ISNLD
Sbjct: 200 SNLSISNLD 208
>SPAC29A4.15 |||serine-tRNA ligase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 450
Score = 25.4 bits (53), Expect = 5.7
Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +2
Query: 92 NELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNN-TIRTW 241
N L E K L+ + K NVV I ++ D+ + + NN IR W
Sbjct: 81 NSLTERKKNLIEQETAKNKEMLNVVSSIGNIVHDSVPVSMDEDNNEIIRKW 131
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 25.0 bits (52), Expect = 7.5
Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 3/22 (13%)
Frame = +2
Query: 50 ICLVGY---LVYAGHLNNELQE 106
+CL+GY LVYAG+ NE ++
Sbjct: 266 LCLLGYEFFLVYAGYTTNESEK 287
>SPCC330.03c |||NADPH-hemoprotein reductase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 145
Score = 25.0 bits (52), Expect = 7.5
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +2
Query: 224 NTIRTWDAVVKNGKKISNLDEKI 292
+T + WDA+V +GK +S ++ I
Sbjct: 48 HTQQDWDALVASGKNLSGVESPI 70
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 24.6 bits (51), Expect = 9.9
Identities = 15/48 (31%), Positives = 25/48 (52%)
Frame = +2
Query: 89 NNELQEIKSILVVMYESMEKHFSNVVDEIDSLKTDTFMMLSNLQNNTI 232
NNE E K V++ +S++ V +DS T+T + + +Q TI
Sbjct: 39 NNE--EEKDANVILNKSVKMEVEEVNGHVDSSSTETDIEMQVIQQPTI 84
>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1530
Score = 24.6 bits (51), Expect = 9.9
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -2
Query: 460 SIQRTDASSNITLFVGFIFQNIVATI 383
S++ T N+ +FVG++F NI A +
Sbjct: 1481 SMRYTHRWRNLGIFVGYVFFNIFAVL 1506
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 24.6 bits (51), Expect = 9.9
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 188 TDTFMMLSNLQNNTIRTWDAVVKNGK 265
TD+ +++S+ Q+ T++ WD K K
Sbjct: 441 TDSRLLVSSSQDTTLKVWDVRSKKMK 466
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,261,248
Number of Sequences: 5004
Number of extensions: 43796
Number of successful extensions: 149
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 231978230
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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