Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m19
         (492 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    23   1.8  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   9.4  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   9.4  
AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...    21   9.4  

>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 29  LTLIRNRDSIKQHWRELLENNTVNN 103
           L L+ N  S +  W ++  NNT NN
Sbjct: 116 LDLVPNHTSDQHKWFQMSINNTNNN 140


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 121 RCGAIGKRTVRAASQE 168
           +CG I KRT+    +E
Sbjct: 30  KCGGIDKRTIEKFEKE 45


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = +2

Query: 164 KNSQVEHKMTMLNCDYAMLKHEHKITELKLKWANRDLEEFTKKTQE 301
           KN    +    L+C   M KH + I    +   N  + E T   +E
Sbjct: 108 KNCVNPYDRDSLSCWLQMTKHHNFIKVCSVNDVNMTITELTDPVKE 153


>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +1

Query: 121 RCGAIGKRTVRAASQE 168
           +CG I KRT+    +E
Sbjct: 30  KCGGIDKRTIEKFEKE 45


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,011
Number of Sequences: 438
Number of extensions: 1808
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)