Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m18
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    28   1.2  
SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual       27   1.6  
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    27   2.9  
SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyc...    26   3.8  
SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA methyltransfera...    26   5.0  
SPCC126.14 |prp18||U5 snRNP-associated protein Prp18|Schizosacch...    26   5.0  
SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces pom...    25   6.6  
SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyc...    25   8.8  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.9 bits (59), Expect = 1.2
 Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 1/97 (1%)
 Frame = +3

Query: 252 SRWRSNKDI-HPKPLDRAEILRVEKATRGQSKNELWTLLRLDRXXXXXXXXXXGNMLQRP 428
           S + S+ D+ H K L+++EIL  ++  RGQ + +L +   L +             L   
Sbjct: 190 SEFVSHLDMYHSKLLNKSEILSTKRVNRGQDQFDL-SSFPLLKVFSSVFKVAYSKALLDA 248

Query: 429 ALLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVE 539
             LF +  E+ + E  GI+++ + E    K + +VV+
Sbjct: 249 EKLFPSIDEAAIAEDIGILIEDL-ESDACKFSHSVVD 284


>SPAC589.04 |||metaxin 1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -1

Query: 327 WPFRHVKSLHDPKVLDEYLCLNANETT 247
           WP   +KS+  P  +   +CL  NE+T
Sbjct: 156 WPLNIIKSIGLPSQIKRKICLQLNEST 182


>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +3

Query: 15  IYFNILNSSDSWEVPKYMKNLFDEMQLEPPAILPLG 122
           I +N   ++ +W++P Y +   +E Q  PP   PLG
Sbjct: 36  IPYNTSANNRNWQIPLYWQQRGNEFQASPPP--PLG 69


>SPBC1709.05 |sks2|hsc1|heat shock protein Sks2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 613

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 15/54 (27%), Positives = 28/54 (51%)
 Frame = +3

Query: 441 GNAQESHVKETNGIMLDHMREIIKNKITSAVVETVLDCGMFFSSLGLHAASPDA 602
           G  ++   +E + ++L  M+EI + K+   V + V+    +FS     AA+ DA
Sbjct: 111 GEKKQFTAQEISAMVLTKMKEISEAKLNKRVEKAVITVPAYFSD-SQRAATKDA 163


>SPBC25D12.05 |trm1||N2,N2-dimethylguanosine tRNA
           methyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 548

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -1

Query: 309 KSLHDPKVLDEYLCLNANETTALDSTRSFSHNC 211
           KS H  ++LD+   L+    T  D+T  F  NC
Sbjct: 78  KSHHRHQLLDQNSELSQENLTKCDTTHDFEKNC 110


>SPCC126.14 |prp18||U5 snRNP-associated protein
           Prp18|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 343

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/43 (25%), Positives = 25/43 (58%)
 Frame = +3

Query: 417 LQRPALLFGNAQESHVKETNGIMLDHMREIIKNKITSAVVETV 545
           ++ P  LFG ++E+ ++    ++     E I+N++ +  VET+
Sbjct: 136 MKEPIRLFGESEEATIQRYYSLLKYKKLEEIENELLTKGVETI 178


>SPBC25B2.03 |||zf-C3HC4 type zinc finger|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 554

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -1

Query: 336 VPWWPFRHVKSLHDPK 289
           +PW P +H+K  HD K
Sbjct: 259 IPWPPNQHIKFAHDDK 274


>SPCC4B3.15 |mid1|dmf1|medial ring protein Mid1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 920

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 8/16 (50%), Positives = 13/16 (81%)
 Frame = -1

Query: 264 NANETTALDSTRSFSH 217
           N+NET+  D T++F+H
Sbjct: 41  NSNETSGYDQTKNFTH 56


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,657,731
Number of Sequences: 5004
Number of extensions: 52022
Number of successful extensions: 146
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)