Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m18
         (618 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0846 - 7920960-7921112,7921247-7921373,7921455-7921585,792...    31   0.97 
02_05_1337 - 35780076-35780290,35780377-35780408,35780490-357805...    31   0.97 
12_02_0932 + 24519204-24519380,24520074-24520128,24520251-245222...    30   1.7  
06_02_0207 + 13017538-13017670,13019486-13019658,13020754-130208...    27   9.0  

>12_01_0846 -
           7920960-7921112,7921247-7921373,7921455-7921585,
           7921992-7922033,7922126-7922167,7922416-7922508,
           7922590-7922685,7923281-7923448,7923519-7923594,
           7923687-7923766,7923855-7923950,7924023-7924392,
           7925356-7925431,7925559-7925649
          Length = 546

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +1

Query: 313 VSKRPPGDKAKMSCGRYCVWIAAQRLHRPIRP 408
           +S++PPG+K     GR C  I  Q+ + P+ P
Sbjct: 429 ISRKPPGEKHGDRIGRICTHILKQQSYYPLYP 460


>02_05_1337 -
           35780076-35780290,35780377-35780408,35780490-35780584,
           35780670-35780743,35780851-35780986,35781072-35781135,
           35781333-35781395,35781514-35781656,35781752-35781889,
           35781973-35782094,35782210-35782375,35782647-35782652,
           35782988-35783059,35783241-35783348,35783719-35783848,
           35783964-35784070,35784896-35785005,35785302-35785435,
           35785528-35785982,35786068-35786595
          Length = 965

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +3

Query: 267 NKDIHPKPLDRAEILRVEKATRG 335
           N DIH +PL  AE ++++KA RG
Sbjct: 394 NSDIHSRPLSDAERVKIKKALRG 416


>12_02_0932 +
           24519204-24519380,24520074-24520128,24520251-24522202,
           24522288-24522446,24522878-24523049,24523131-24523429,
           24524037-24524285
          Length = 1020

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 21/75 (28%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
 Frame = -1

Query: 435 KALVV-VTCCRTNWTMQTLCCDPNAIASTAHFCFVPWWPFRHVKSLHDPKVLDEYLCLNA 259
           KALV  +  C T  +  T+C D     +T H   V      ++K +++PK   + LC   
Sbjct: 435 KALVRHLAACETMGSATTICSDKTGTLTTNHMTVVKACICGNIKEVNNPKNASD-LCSEL 493

Query: 258 NETTALDSTRSFSHN 214
            ET       S  +N
Sbjct: 494 PETVVKTLLESIFNN 508


>06_02_0207 +
           13017538-13017670,13019486-13019658,13020754-13020845,
           13022213-13022271,13022659-13022759,13023907-13023988,
           13024092-13024321
          Length = 289

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 18/52 (34%), Positives = 27/52 (51%)
 Frame = -3

Query: 502 SRMWSNMMPLVSLT*LSCAFPNKSAGRCNMLPDELDDADAVLRSKRNSVHSS 347
           +R   +M+   ++  +  A  NKSA RCN LP        +LR+K NS+  S
Sbjct: 128 NRAIHSMLQHTNILCVGIAMSNKSAERCNDLP---MPCSQILRAKVNSLSFS 176


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,328,780
Number of Sequences: 37544
Number of extensions: 339221
Number of successful extensions: 887
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 858
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)