Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m18
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical pr...    30   1.2  
AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical ...    29   2.7  
AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical ...    29   2.7  
U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical pr...    29   3.5  
U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical pr...    28   6.1  

>Z68270-2|CAA92567.1|  532|Caenorhabditis elegans Hypothetical
           protein ZC410.3 protein.
          Length = 532

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 15/33 (45%), Positives = 20/33 (60%)
 Frame = +3

Query: 12  IIYFNILNSSDSWEVPKYMKNLFDEMQLEPPAI 110
           II+FN+ +SSD  +   Y+KNL     L P AI
Sbjct: 405 IIHFNMEDSSDMTQADTYVKNLDAHSLLRPEAI 437


>AF098505-3|AAL27269.2|  578|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1b protein.
          Length = 578

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 366 AIASTAHFCFVPWWP 322
           A+AS A FCF+P WP
Sbjct: 47  ALASEADFCFIPEWP 61


>AF098505-2|AAC67416.2|  814|Caenorhabditis elegans Hypothetical
           protein Y71H10A.1a protein.
          Length = 814

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = -1

Query: 366 AIASTAHFCFVPWWP 322
           A+AS A FCF+P WP
Sbjct: 250 ALASEADFCFIPEWP 264


>U41553-1|AAA83291.1| 1250|Caenorhabditis elegans Hypothetical
           protein ZK1193.2 protein.
          Length = 1250

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/37 (35%), Positives = 17/37 (45%)
 Frame = -1

Query: 135 TKSKDLMVKWRGVPIAFHQTNFSCTLVLPNCHYYLKY 25
           T + DL   W  V  + HQ+ +  T  L NC  Y  Y
Sbjct: 794 TSADDLQTTWLSVLASLHQSYYVVTHQLNNCSNYQDY 830


>U41277-8|AAA82479.1|  285|Caenorhabditis elegans Hypothetical
           protein C06E4.8 protein.
          Length = 285

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +3

Query: 429 ALLFGNAQESHVKETNGIMLDHMREIIKNKI 521
           A  FG  +   + E NG M  H+ EIIKN++
Sbjct: 122 AEFFGMNETLKIIEENGDMYGHLTEIIKNRM 152


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,997,101
Number of Sequences: 27780
Number of extensions: 303186
Number of successful extensions: 736
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 736
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)