Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17m13
(651 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.77
SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces pomb... 29 0.77
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 28 1.0
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 27 2.3
SPAC823.10c |||mitochondrial carrier with solute carrier repeats... 26 4.1
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 26 4.1
SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein lig... 26 5.4
SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2 family|Schizosaccharo... 26 5.4
SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3 |Schi... 25 7.2
SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase |Schizosa... 25 7.2
>SPAC6C3.03c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 100
Score = 28.7 bits (61), Expect = 0.77
Identities = 22/77 (28%), Positives = 36/77 (46%)
Frame = -2
Query: 545 ILIGQLSTFE*YSTLRFLPPSIPLDEGSSKFTFRGHCTKLAKTRFLLNDFEYLNINGTTA 366
++I + + YS+ RFL PS LD +K+ G ++A R LLN +I
Sbjct: 10 VVIAIFTNAKRYSSFRFLFPSKNLDPNETKW---GWNIRIATFRSLLNTIP--SIPHWRT 64
Query: 365 TWKTKTPDVIVAPSSSI 315
W T ++ PS+ +
Sbjct: 65 MWGTVRVGIVHTPSAKV 81
>SPBC1E8.03c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 477
Score = 28.7 bits (61), Expect = 0.77
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 445 LNVNFEEPSSSGIEGGRNLSVEYHSK 522
LN NFE P S+GIE SV HSK
Sbjct: 421 LNPNFELPESNGIEFAHEDSVLGHSK 446
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 28.3 bits (60), Expect = 1.0
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 363 VENENTGCYCCTKQQYSS 310
V N N GC CC +QYS+
Sbjct: 66 VSNHNVGCSCCYFRQYST 83
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/37 (29%), Positives = 16/37 (43%)
Frame = -2
Query: 440 HCTKLAKTRFLLNDFEYLNINGTTATWKTKTPDVIVA 330
HC L RF +N F + T W K P ++ +
Sbjct: 348 HCWDLRSPRFPVNSFYDWHNGATQVKWNYKNPHILAS 384
>SPAC823.10c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 296
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 346 RMLLLHQAAVFQLYKGALKYKYRS 275
R ++LH+ VF L+KG L RS
Sbjct: 55 RRIILHEGGVFSLWKGTLPSILRS 78
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.2 bits (55), Expect = 4.1
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -2
Query: 152 IQDKY*TYY*LMIFSGI*TIYIHLRIKLKTLKNLRKKIIRTFGLL 18
I +Y T + L++ + + I I L + L N I+RT+GL+
Sbjct: 1831 IVQRYGTMFFLLLIAFLALIIIPLVVAKDLLANFEMDILRTYGLM 1875
>SPAC12B10.01c ||SPAC31F12.02c, SPAC637.15c|ubiquitin-protein ligase
E3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1647
Score = 25.8 bits (54), Expect = 5.4
Identities = 19/55 (34%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
Frame = +1
Query: 460 EEPSSSGIEGGRNLSVEY-HSKVDNCPIKIGIWHILPRTSYERLKGNFQ-VDSDK 618
E PSS +E GR+L++ + S++ P+ + ++ E+LKG Q V SDK
Sbjct: 70 EPPSSKSVEFGRHLNMRHDFSELLEQPLTTSKTRVF-KSFNEKLKGKPQLVKSDK 123
>SPBC18E5.01 ||SPBC29A3.19|cycloisomerase 2
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 25.8 bits (54), Expect = 5.4
Identities = 23/79 (29%), Positives = 33/79 (41%), Gaps = 5/79 (6%)
Frame = -2
Query: 560 ICHIP--ILIGQLSTFE*YSTLRFLPPSIPLDEGSSKFTFRGHCTKLAKTR---FLLNDF 396
IC + IL+ +TFE + LPPS+ L E KF ++A FL+
Sbjct: 189 ICELANRILVYDTNTFECLQDVSTLPPSMTL-EKDPKFPQPPSAAEVAVVHDGPFLVASN 247
Query: 395 EYLNINGTTATWKTKTPDV 339
YLN + W + V
Sbjct: 248 RYLNHGQCDSLWAARLDPV 266
>SPAC22E12.13c |rpl2403|rpl24-3|60S ribosomal protein L24-3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 192
Score = 25.4 bits (53), Expect = 7.2
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = +3
Query: 288 YF-SAPLYSWNTAAWCNNNIRCFRFPRSCCTINIQI 392
YF S P+Y + + N+ + FRF RS C N ++
Sbjct: 7 YFCSGPVYPGHGIMFVRNDSKVFRFCRSKCHKNFKM 42
>SPBC1289.08 |||UDP-N-acetylglucosamine diphosphorylase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Frame = +3
Query: 432 CTMAS-ECELRRTLVEWYRGRQES 500
CT S EC L+ +EW +G+Q S
Sbjct: 447 CTYVSPECSLQGESLEWIKGKQVS 470
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,719,112
Number of Sequences: 5004
Number of extensions: 58121
Number of successful extensions: 147
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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