Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17m13
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1359 + 29554078-29554375,29554470-29554655,29554768-295549... 31 0.80
05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,518... 31 1.1
04_03_0036 - 9950353-9950379,9950753-9950791,9951021-9951194,995... 30 1.8
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 29 4.2
05_01_0242 + 1804183-1806096 28 5.6
05_03_0328 - 12468142-12468262,12468443-12468641,12468758-124689... 28 7.4
04_03_0283 + 13887388-13887573,13887711-13887806,13888517-138886... 28 7.4
03_05_1059 - 30020877-30021539,30022367-30022375 28 7.4
09_02_0607 - 11183382-11183387,11183481-11183637,11184220-111842... 27 9.8
08_01_0601 - 5268520-5271112,5272448-5272950 27 9.8
>06_03_1359 +
29554078-29554375,29554470-29554655,29554768-29554923,
29555557-29555694,29555789-29555909,29556339-29556345
Length = 301
Score = 31.1 bits (67), Expect = 0.80
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Frame = +1
Query: 469 SSSGIEGGRNLSVEYHSKVD-NCPIKIGIWHILPRTSYERLKGNFQVDSDKEE 624
SSS +GG+ +SV + KVD CP +HI + ++ L Q D+ K +
Sbjct: 208 SSSRKKGGKEISVVQNWKVDPRCPNASNPFHICAQYCFDHLNETGQKDTSKPD 260
>05_01_0578 + 5180538-5181385,5182480-5182595,5183397-5183605,
5184024-5184143,5184247-5184375,5184466-5184591,
5185550-5185667,5186471-5186680,5186788-5187100,
5187467-5187560,5187760-5187868,5188322-5188593,
5188684-5188811,5188977-5189211,5189794-5189982,
5190069-5190349,5190431-5190698,5190719-5190961,
5191598-5191680,5192484-5192493
Length = 1366
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/43 (27%), Positives = 24/43 (55%)
Frame = +1
Query: 430 FVQWPLNVNFEEPSSSGIEGGRNLSVEYHSKVDNCPIKIGIWH 558
+ Q+ L ++ P SSG++GG + +YH++ N + + H
Sbjct: 1136 YYQFGLVIHSVGPFSSGLQGGSRMKFDYHAQFQNTDVDSQLDH 1178
>04_03_0036 -
9950353-9950379,9950753-9950791,9951021-9951194,
9951287-9951415,9951782-9952012,9952655-9952732,
9953035-9953055,9953790-9953855,9953935-9954015,
9954148-9954920,9955461-9955654,9956723-9956817,
9958190-9958219,9958334-9958453,9959185-9959262,
9959428-9959505,9960459-9960488,9960614-9960739,
9961239-9961379,9963416-9963532,9963619-9963670,
9963759-9963890,9964668-9964720,9964816-9964911,
9965255-9965260,9965416-9965561,9966494-9966629,
9966885-9967038,9968017-9968154,9968268-9968614
Length = 1295
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/38 (36%), Positives = 21/38 (55%)
Frame = +1
Query: 502 SVEYHSKVDNCPIKIGIWHILPRTSYERLKGNFQVDSD 615
S+ YHS+ +C + + + P S E K NFQV+ D
Sbjct: 335 SIHYHSQSTSCSLDLNNFSSHPDGSPEISKSNFQVELD 372
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 28.7 bits (61), Expect = 4.2
Identities = 17/48 (35%), Positives = 22/48 (45%)
Frame = +3
Query: 240 LHEIRLLKHV*FDRYLYFSAPLYSWNTAAWCNNNIRCFRFPRSCCTIN 383
LH+I L F L FSA +SW A ++ F FP C +N
Sbjct: 57 LHQIIALLSS-FQDLLAFSATCHSWRAALSSFPSVYTFNFPPLCLKLN 103
>05_01_0242 + 1804183-1806096
Length = 637
Score = 28.3 bits (60), Expect = 5.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +1
Query: 157 DAFVVIIDFL*FSFRMLLIVYFKLINKLC 243
DAF ++I+ L F + L+ Y +IN LC
Sbjct: 485 DAFAMVIEMLNNGFELSLVTYNTVINCLC 513
>05_03_0328 -
12468142-12468262,12468443-12468641,12468758-12468974,
12469896-12469994,12470843-12470899,12470943-12472577
Length = 775
Score = 27.9 bits (59), Expect = 7.4
Identities = 31/125 (24%), Positives = 57/125 (45%), Gaps = 9/125 (7%)
Frame = +1
Query: 301 LYTAGILLLGATITSGVFVFHVAVVPLIFKYSKS-----FRRNLVFANFVQWPLNV--NF 459
L T +L G SG +VF +++VP + +SK+ F ++ A QW ++V F
Sbjct: 537 LDTPEVLWKGFQTRSGRYVFLISLVPQVIYFSKARSIFLFNYMIISAISQQWHIDVVILF 596
Query: 460 EEPSSSGI-EGGRNLSVEYHSKVDNCPIKIGIWHILPRTSYERLKGNFQVDSDKEELNR- 633
E I E + + E + ++ + + +W + T +E G D + EE+ +
Sbjct: 597 NEYLQFEIDENEFDRTRELYERLLDRTKHLKVW--ISYTEFEASAGLAGEDGESEEIKKE 654
Query: 634 IMDHE 648
+ HE
Sbjct: 655 VSYHE 659
>04_03_0283 +
13887388-13887573,13887711-13887806,13888517-13888637,
13888734-13888840,13888949-13889166,13890219-13890396,
13890492-13890611,13891601-13891687,13892401-13892511,
13892618-13893439
Length = 681
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/58 (25%), Positives = 28/58 (48%)
Frame = +1
Query: 265 MFDLTGICILVPLYTAGILLLGATITSGVFVFHVAVVPLIFKYSKSFRRNLVFANFVQ 438
+ + G+CIL+PL A I L ++ +G +V H + + S + V F++
Sbjct: 194 LLGIVGLCILLPLMIAVIYLSRSSKYTGNYVMHQTLSTYYYFMKPSLAPSKVMDVFIK 251
>03_05_1059 - 30020877-30021539,30022367-30022375
Length = 223
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +3
Query: 120 KLIVCLVFILY**CICCHNRFSVIFVPHVVN-CL 218
+LI+ L+FI+Y C C + F++ F+P + CL
Sbjct: 144 RLIIWLMFIIY-ICYICSHGFTLTFIPDTTDVCL 176
>09_02_0607 -
11183382-11183387,11183481-11183637,11184220-11184284,
11184397-11184469,11184759-11184905,11185515-11185562,
11185637-11185716,11186112-11186439,11186525-11186576,
11187397-11187523,11187613-11187990
Length = 486
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 550 IWHILPRTSYERLKGNFQVDSDKEELNRIMDHE 648
IWH ER K + DKE+L R++DH+
Sbjct: 376 IWHQSLLAFVERYKNELE-KKDKEKLARLLDHQ 407
>08_01_0601 - 5268520-5271112,5272448-5272950
Length = 1031
Score = 27.5 bits (58), Expect = 9.8
Identities = 10/32 (31%), Positives = 14/32 (43%)
Frame = -2
Query: 407 LNDFEYLNINGTTATWKTKTPDVIVAPSSSIP 312
L EYL + G A W P+ P++ P
Sbjct: 840 LRQLEYLTLRGRVAPWNPPPPETTTTPTTPPP 871
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,751,964
Number of Sequences: 37544
Number of extensions: 310196
Number of successful extensions: 601
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 598
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 601
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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