Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m13
         (651 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical ...    37   0.014
Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical pr...    33   0.13 
Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical pr...    30   1.6  
Z81542-5|CAB04420.2|  433|Caenorhabditis elegans Hypothetical pr...    29   3.8  
Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical p...    28   5.0  

>AC024878-2|AAK85512.1|  345|Caenorhabditis elegans Hypothetical
           protein Y97E10AL.2 protein.
          Length = 345

 Score = 36.7 bits (81), Expect = 0.014
 Identities = 25/99 (25%), Positives = 54/99 (54%), Gaps = 3/99 (3%)
 Frame = +1

Query: 364 VAVVPLIFKYSKSFRRNLVFANFVQWPLNVNFEEPSSSGIEG-GRNLSVEYHSKVDNCPI 540
           V  +P++  +   + + + F NF + P N ++ + +S+ ++  GR+L +   S       
Sbjct: 24  VIFLPILVYFLPRYTQFIFFLNFRRLP-NTDYNDLASNNVKSIGRSLHLPGKSG------ 76

Query: 541 KIGIWHILP-RTSYE-RLKGNFQVDSDKEELNRIMDHEL 651
           +IG+WHILP + S E R +G    + D +++ R  ++++
Sbjct: 77  RIGVWHILPNKLSLEWRTEGKHPTERDFDDMMRDSENQI 115


>Z82270-1|CAB63203.1|  914|Caenorhabditis elegans Hypothetical
           protein F53H2.1 protein.
          Length = 914

 Score = 33.5 bits (73), Expect = 0.13
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +1

Query: 469 SSSGIEGGRNLSVEYHSKVDNCPIKIGIWHILPRTSYERL-KGNFQVDSDKEE 624
           SS G  GG  L  E+H+   N  ++  IWH+ P     R+ +   ++DS K++
Sbjct: 439 SSIGNPGGPKLE-EFHNATSNLNVEPNIWHVTPGKDKNRIDRYQSELDSSKQQ 490


>Z49966-4|CAA90244.1|  360|Caenorhabditis elegans Hypothetical
           protein F35C11.4 protein.
          Length = 360

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = +2

Query: 92  ILFKYLKKS*VNSMFSIYPVLMMHLLS**IFCDFRSACC 208
           IL  +L  S + S+F  YP+L   +LS   F D R+  C
Sbjct: 229 ILISFLSCSAIKSLFKSYPILTFLILSIACFLDLRTHGC 267


>Z81542-5|CAB04420.2|  433|Caenorhabditis elegans Hypothetical
           protein F49A5.8 protein.
          Length = 433

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 30/120 (25%), Positives = 57/120 (47%), Gaps = 5/120 (4%)
 Frame = +1

Query: 283 ICILVPLYTAGILLLGATITSGVFVFHVAV-VPLIFKYSKSFRRNLVFANFVQWPL---N 450
           + I++ L    ILL  +  TSGV+VF +A+ V  I  +S ++ ++ ++     +P+   N
Sbjct: 86  LAIILCLVHLMILLRKSLRTSGVYVFMIAICVSDILNFSLAYPKDAIYYKHSWFPVPIHN 145

Query: 451 VNFEEPSSSG-IEGGRNLSVEYHSKVDNCPIKIGIWHILPRTSYERLKGNFQVDSDKEEL 627
            N +E    G IE   +L  +      N   ++ IW  +   S   L   F +++  ++L
Sbjct: 146 NNGDECVKYGWIE--VDLVAQAMELAHNVTRRLSIWLAMVMASLRTLAVAFPMNNQIQKL 203


>Z69787-10|CAH65466.1|  398|Caenorhabditis elegans Hypothetical
           protein C44C10.11 protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 25/103 (24%), Positives = 50/103 (48%), Gaps = 13/103 (12%)
 Frame = +1

Query: 361 HVAVVPLIFKYSKSFRRNLVF---ANFVQWPLNVNFEEPSSSGIEGGRNLSVEYH----- 516
           ++A +P + K + + ++ L+     N +   L  +   P  + I+G   +++E       
Sbjct: 60  YIAYLPTVVKVTPAHKKRLLMNAELNNLFENLRTHKTGPLDTEIDGANFVAIEKDVEPHL 119

Query: 517 -SKVDNCP---IKIGIWHILPRTSYERLKGN-FQVDSDKEELN 630
             K+   P   +K+ IW +LPR  YE    N  ++D+ K+EL+
Sbjct: 120 IRKIQLLPNGMLKL-IWPVLPRNEYESNSNNQEEIDATKKELS 161


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,789,913
Number of Sequences: 27780
Number of extensions: 317373
Number of successful extensions: 786
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 761
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 786
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1444744186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)