Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m11
         (691 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1314 + 29266320-29266346,29266463-29266556,29266663-292667...    33   0.28 
05_07_0148 + 28024820-28025293,28025655-28025702,28026034-280260...    29   2.6  
03_05_0370 + 23541188-23542537                                         29   3.5  
12_02_0189 + 15165485-15168694                                         28   8.0  
04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251     28   8.0  
03_02_0094 - 5583932-5584036,5584137-5584200,5584305-5584387,558...    28   8.0  

>06_03_1314 +
           29266320-29266346,29266463-29266556,29266663-29266712,
           29266798-29266847,29266945-29267053,29267135-29267195,
           29267291-29267343,29267629-29267721,29268091-29268166,
           29268401-29268508,29268596-29268840
          Length = 321

 Score = 32.7 bits (71), Expect = 0.28
 Identities = 14/35 (40%), Positives = 22/35 (62%)
 Frame = +2

Query: 554 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFA 658
           R R   KLL+ID++F++   V   +DLC  PG ++
Sbjct: 22  RARSAFKLLQIDQEFNIFHGVKRVVDLCAAPGSWS 56


>05_07_0148 +
           28024820-28025293,28025655-28025702,28026034-28026080,
           28026334-28026496,28026595-28026656,28026820-28027003,
           28027093-28027182,28027553-28027686,28027747-28027936,
           28028103-28029033,28029860-28030065
          Length = 842

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 14/44 (31%), Positives = 21/44 (47%)
 Frame = +2

Query: 554 RPRCWRKLLEIDKKFHVCRHVDTFLDLCGGPGEFANYTMSLNPL 685
           R R   KLL++D +F         LDLC  PG +    ++  P+
Sbjct: 23  RSRAAFKLLQLDARFRFLPTARAVLDLCAAPGGWVQVAVNHAPV 66


>03_05_0370 + 23541188-23542537
          Length = 449

 Score = 29.1 bits (62), Expect = 3.5
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +2

Query: 494 FSSKSVVCARSKLFDKRPTRRPRCWRKLLEIDKKFHV--CRHVDTFLDLCGGPGEFANYT 667
           +++  +  A S+LFD+ PTR    W  LL     FH   C  V  F D+       A +T
Sbjct: 45  YANAGLPAAASRLFDEMPTRDAVAWNALLAC-LVFHARPCAAVAAFRDMA-----TAGFT 98

Query: 668 MSLNPLC 688
            +   LC
Sbjct: 99  PTATTLC 105


>12_02_0189 + 15165485-15168694
          Length = 1069

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)
 Frame = +1

Query: 94   LNGDEIEVSPEHRSLAWRELIINVANNTPLDNTFRTMFQKADFENFD 234
            LNG  ++      +L+WR+++  V NN   D   R  F   D  + D
Sbjct: 913  LNGCNLKYYESKLNLSWRKVLKEVMNNKESDENNRWEFLNPDASDSD 959


>04_04_1200 + 31690611-31690914,31690993-31691293,31691391-31696251
          Length = 1821

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -2

Query: 243  CIVVEIFKIGFLKHCSKRVVKRCVVGHIYNQFPP 142
            C   EI +  +L H SK  +  C   H++N  PP
Sbjct: 1022 CQKFEIERKSWLSHLSKLTIHDCPHLHVHNPLPP 1055


>03_02_0094 -
           5583932-5584036,5584137-5584200,5584305-5584387,
           5584523-5584588,5584711-5584801,5585259-5585392,
           5586219-5586413,5586886-5587015,5587873-5587958
          Length = 317

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = +2

Query: 548 TRRPRCWRKLLEIDKKFHVCRHVDTFLDLCGGP 646
           T   RC  K+L+  KK  + R +    +LCGGP
Sbjct: 55  TNDERCIIKILKPVKKKKIKREIKILQNLCGGP 87


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,174,580
Number of Sequences: 37544
Number of extensions: 347957
Number of successful extensions: 910
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1756684372
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)