Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m07
         (435 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.02c |taf13||transcription factor TFIID complex subunit ...    28   0.71 
SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|...    27   1.6  
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe...    26   2.2  
SPBC26H8.05c |||serine/threonine protein phosphatase |Schizosacc...    25   5.0  
SPAC4C5.01 |||haloacid dehalogenase-like hydrolase |Schizosaccha...    25   5.0  
SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces pom...    24   8.8  

>SPCC1494.02c |taf13||transcription factor TFIID complex subunit
           Taf13|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 132

 Score = 27.9 bits (59), Expect = 0.71
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -1

Query: 357 DFKLFLLHNYDNCENIEEYFLINNFSIADYEFEDMFEIVRI 235
           DFK  L  +      +EE    +NFS+A + F+ +   +RI
Sbjct: 72  DFKFALRDDPKKLGRVEELLRSSNFSVAGHPFQGVLSRIRI 112


>SPCC1322.07c |mug150||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 104

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 215 YFLLNIICN*NFVFILLKSWI 153
           +FL NII   N++++L K+WI
Sbjct: 30  FFLKNIIVLSNYLYLLYKAWI 50


>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 460

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -1

Query: 312 IEEYFLINNFSIADYEFEDMFEIV 241
           +E+YF +N   I+D E ED+ +I+
Sbjct: 347 LEKYFEVNALDISDSESEDLSDIL 370


>SPBC26H8.05c |||serine/threonine protein phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 348

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 147 KCPNPKFLTPMTSNLICVHANKIFRHYDQCVHQ 49
           KC  PK +T +  N       +++  YD+CV +
Sbjct: 100 KCKYPKEMTLIRGNHESRQITQVYGFYDECVRK 132


>SPAC4C5.01 |||haloacid dehalogenase-like hydrolase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 246

 Score = 25.0 bits (52), Expect = 5.0
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 76  KNLVGVHTNQIASHRCQKLGIGAFFLIQDFNKIKTK 183
           KNLVG   N+I   +C+ L   + F I  +  I +K
Sbjct: 209 KNLVGDQLNEIVDSQCETLPSLSEFDINKYLNINSK 244


>SPBC17G9.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 274

 Score = 24.2 bits (50), Expect = 8.8
 Identities = 8/13 (61%), Positives = 12/13 (92%)
 Frame = -1

Query: 123 TPMTSNLICVHAN 85
           T +T++L+CVHAN
Sbjct: 140 TDLTADLLCVHAN 152


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,416,379
Number of Sequences: 5004
Number of extensions: 25682
Number of successful extensions: 58
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 156095170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)