Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m07
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006632-10|AAK85471.1|  293|Caenorhabditis elegans Hypothetical...    31   0.48 
Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical pr...    29   1.5  
U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine rec...    29   1.9  
Z48585-10|CAJ43439.1|  338|Caenorhabditis elegans Hypothetical p...    27   5.9  
Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical pr...    27   5.9  

>AC006632-10|AAK85471.1|  293|Caenorhabditis elegans Hypothetical
           protein F28A10.5 protein.
          Length = 293

 Score = 30.7 bits (66), Expect = 0.48
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 360 YDFKLFLLHNYDNCENIEEYFLINNFSIADYEFEDMFEIV 241
           Y F++F +     CE   EY LIN+F +A +E   +  I+
Sbjct: 249 YGFRIFNVDPNPYCEACCEYSLINDFCMAQFEVTPLASII 288


>Z81099-2|CAB03188.2|  297|Caenorhabditis elegans Hypothetical
           protein K08F9.3 protein.
          Length = 297

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -1

Query: 279 IADYEFEDMFEIVRIDCKDXXXXLAKYNM*LKFCF 175
           +AD+EF+D  +I+    K      AKYN  L F F
Sbjct: 253 VADFEFDDYNDILLNSVKPCNNTKAKYNFSLNFDF 287


>U80843-16|AAB37958.1|  327|Caenorhabditis elegans Serpentine
           receptor, class h protein274 protein.
          Length = 327

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 6/40 (15%)
 Frame = -2

Query: 266 NLKTCLKLFVLIVKICY------YFLLNIICN*NFVFILL 165
           N++TC+ L +L++ +CY      + + N + N NF FI +
Sbjct: 242 NIQTCIPLAILLIPLCYLVISRVFLIYNQVAN-NFCFITI 280


>Z48585-10|CAJ43439.1|  338|Caenorhabditis elegans Hypothetical
           protein ZK673.11b protein.
          Length = 338

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  VRSQLQKHKLDARIDHNDEKSCWRAH 98
           V S+ Q H+++   ++ DE+SC  AH
Sbjct: 284 VASKFQLHRIEEESENGDEQSCAGAH 309


>Z48585-9|CAD59166.1|  347|Caenorhabditis elegans Hypothetical
           protein ZK673.11a protein.
          Length = 347

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 21  VRSQLQKHKLDARIDHNDEKSCWRAH 98
           V S+ Q H+++   ++ DE+SC  AH
Sbjct: 293 VASKFQLHRIEEESENGDEQSCAGAH 318


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,781,210
Number of Sequences: 27780
Number of extensions: 146491
Number of successful extensions: 366
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 366
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)