Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc17m07
         (435 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    23   2.0  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   6.0  

>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +3

Query: 9   MAKVVRSQLQKHKLDARIDHNDEKSCWRAHKSNC 110
           M  V +    K    +R  HN+ +   RAH  NC
Sbjct: 34  MRTVTKRPKTKKSQGSRTTHNELEKNRRAHLRNC 67


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = -2

Query: 338 YIIMTIVKI*KNIF*LTILA*QITNLKTCLKLFVLIVKICYYFLL 204
           YI+ T + +  N   + I      +L+T   +FV+ + IC +F++
Sbjct: 55  YILFTFLALLGNGLVIWIFC-AAKSLRTPSNMFVVNLAICDFFMM 98


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,116
Number of Sequences: 438
Number of extensions: 1979
Number of successful extensions: 4
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 11368164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)