Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17m01
(747 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|... 29 0.70
SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces po... 29 0.70
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo... 29 0.70
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 28 1.6
SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|c... 28 1.6
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 27 2.1
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 27 3.8
SPAC31G5.15 |||phosphatidylserine decarboxylase |Schizosaccharom... 26 6.6
SPBP35G2.07 |ilv1||acetolactate synthase catalytic subunit|Schiz... 26 6.6
SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 25 8.7
SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces p... 25 8.7
>SPAC17A2.02c |||DUF887 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 290
Score = 29.1 bits (62), Expect = 0.70
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +1
Query: 238 IIGFICIKVSWSWVSA 285
I+ FIC++++W W SA
Sbjct: 207 IVTFICVRIAWGWFSA 222
>SPBC1709.13c |||lysine methyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 547
Score = 29.1 bits (62), Expect = 0.70
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -2
Query: 668 INTQCVYCNPHFALCMFAKVKSVSYLQS 585
+N CNPH LC F ++S+ +QS
Sbjct: 69 LNPNFESCNPHITLCTFLALESLKGIQS 96
>SPCC777.13 |vps35||retromer complex subunit
Vps35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 785
Score = 29.1 bits (62), Expect = 0.70
Identities = 14/50 (28%), Positives = 28/50 (56%)
Frame = +1
Query: 256 IKVSWSWVSAIFYNMVYWIGNILTILLLLAYTCHFVEKYDHWPWFKYEFF 405
+++ W +V+ N++Y G+ L + L L + + +++P F YEFF
Sbjct: 531 VRLLWEFVNTCI-NVLYKNGDSLELCLALYLSAAEMADQENYPDFAYEFF 579
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 27.9 bits (59), Expect = 1.6
Identities = 11/23 (47%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Frame = +3
Query: 447 ICCYHWGKCWICC--CFLWIGGN 509
I C HWGK W+ C+ W G N
Sbjct: 184 IGCPHWGKFWLATLNCYDWDGVN 206
>SPBC16A3.17c |||membrane transporter|Schizosaccharomyces pombe|chr
2|||Manual
Length = 599
Score = 27.9 bits (59), Expect = 1.6
Identities = 24/112 (21%), Positives = 43/112 (38%), Gaps = 3/112 (2%)
Frame = +1
Query: 244 GFICIKVSWSWVSAIFYNMVY-WIGNILTILLLLAYTCHFVEKYDHWPWFKYEFFYCSIM 420
G IC + +W W+ F N+ I L ++ L C F + C I
Sbjct: 241 GAICQRTTWRWI--FFINLPSGGIATALIVVFLHLLPCERTSFKKFLKTFDFIGLVCVIT 298
Query: 421 ALAYVVCSI-FAATIGESVGYAVVFFGLVATCAYGFD-AYQKYKGWNRGLPP 570
+ ++ I A+ G+ ++ + ++ C + F Y + N LPP
Sbjct: 299 GIVLILLGISLGASSGKWRRANILCYLIIGGCLFVFAFIYDTFTKRNAVLPP 350
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 27.5 bits (58), Expect = 2.1
Identities = 18/68 (26%), Positives = 28/68 (41%), Gaps = 1/68 (1%)
Frame = +1
Query: 340 LAYTCHFVEKYDHWPWFKYEFFYCSIMALAYVVCSIFAATIGESVGYAVVFFG-LVATCA 516
L Y F + Y W + F +C + LA + + F T ++V V+F V C
Sbjct: 95 LKYKDAFFKNYGAAEWTLFGF-WCLVCTLALIFLTYFYETWTKAVKVTVIFLAQCVKACG 153
Query: 517 YGFDAYQK 540
G + K
Sbjct: 154 KGIKHFLK 161
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = +1
Query: 235 NIIGFICIKVSWSWVSAIFYNMVYWIGNILTI 330
N FIC VS+ V +I + +VYWIG + I
Sbjct: 267 NWFDFICNYVSFM-VGSIIFLVVYWIGIFIWI 297
>SPAC31G5.15 |||phosphatidylserine decarboxylase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 980
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = -2
Query: 509 VATNPKKTTAYPTLSPMVAANIEH 438
++TNP +T YP +SP N E+
Sbjct: 136 LSTNPDETCKYPVISPPSGRNKEN 159
>SPBP35G2.07 |ilv1||acetolactate synthase catalytic
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 669
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 484 VVFFGLVATCAYGFDAYQK 540
VVF G VAT A G DA+Q+
Sbjct: 180 VVFSGQVATSAIGSDAFQE 198
>SPAC56E4.07 |||N-acetyltransferase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 235
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/45 (28%), Positives = 21/45 (46%)
Frame = +3
Query: 546 RMEQGSATTMKI*RLQITD*LYFSKHTQCKMRITIHTLCINYLLY 680
R + S+ TMK +Q+T YF H C + T + +L +
Sbjct: 40 RFKGMSSETMKALTMQLTRDAYFDPHVTCIVAYTDSNPYVGFLAF 84
>SPAC19E9.03 |pas1|SPAC57A10.01|cyclin Pas1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 411
Score = 25.4 bits (53), Expect = 8.7
Identities = 11/22 (50%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -1
Query: 204 WYSC-DIALVTSKHFLRRWGLL 142
+Y C D LV KH RW LL
Sbjct: 126 FYQCIDYRLVVPKHIFARWSLL 147
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,203,868
Number of Sequences: 5004
Number of extensions: 69523
Number of successful extensions: 194
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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