Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17m01
(747 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0613 + 26617677-26617963,26618726-26618786,26619598-266198... 31 0.74
04_04_0272 - 24073753-24074802 29 3.0
12_02_0667 + 21682386-21682944,21683042-21683201,21683419-216834... 29 3.9
11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764 29 5.2
02_02_0010 - 6077666-6077756,6078017-6078108 29 5.2
04_03_0136 - 11691152-11691268 28 6.9
04_01_0356 + 4663723-4664253 28 6.9
10_05_0034 + 8431753-8431790,8431940-8432063,8432726-8433038,843... 28 9.1
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139... 28 9.1
02_05_1193 - 34880269-34880459,34880531-34880633 28 9.1
>04_04_0613 +
26617677-26617963,26618726-26618786,26619598-26619832,
26619958-26620196,26620493-26620744,26620844-26621024,
26621810-26621898,26622200-26622273,26622365-26622443
Length = 498
Score = 31.5 bits (68), Expect = 0.74
Identities = 20/58 (34%), Positives = 31/58 (53%)
Frame = -3
Query: 532 KHQIHRHRLPPIQRKQQHIQHFPQW*QQILNTQHKLRP*YCSRRTHI*TKASGHTSQQ 359
+HQ H+H+ PP Q++Q PQ Q N+QH+ RR I +A+G + Q+
Sbjct: 33 QHQ-HQHQQPPHPHHHQYVQRQPQPQQTPHNSQHQ----QWLRRNQIAAEAAGASEQK 85
>04_04_0272 - 24073753-24074802
Length = 349
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +1
Query: 445 IFAATIGESVGYAVVFFGLVATCAYGFDAYQKYKGWNRGLPPQ 573
I+ AT+ G FF L CA + +KGW R PP+
Sbjct: 247 IYYATLRPPTGEPTAFFALHGACAVAEGWFAAHKGWPR--PPR 287
>12_02_0667 +
21682386-21682944,21683042-21683201,21683419-21683467,
21683570-21683683,21683794-21684294,21684594-21684980,
21685074-21685172,21685380-21685478,21685817-21685890,
21686387-21687023
Length = 892
Score = 29.1 bits (62), Expect = 3.9
Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Frame = +1
Query: 292 YNMVYWIGNILTILLLLAYTCHFVEKYDHWPWFKY-EFFYCSIMALAYVVCSIFAATIGE 468
+NM +W + L +++ +A+ H V Y + W+K + Y +I L Y IF A
Sbjct: 556 FNM-FWYSHHLFVIVYIAFVVHGVCLYINRTWWKQTTWMYLAIPILLYAGERIFRAL--R 612
Query: 469 SVGYAVVFFGLVA 507
S G+ V VA
Sbjct: 613 SHGFTTVRIEKVA 625
>11_06_0496 - 24325587-24326143,24326658-24327495,24327612-24327764
Length = 515
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Frame = +3
Query: 435 CVFNICCYHWGKCWICCCFLWIG----GNLCLWI*C 530
C ++CC G C +C C + G N C WI C
Sbjct: 178 CDCDVCCCRRGFCNLCMCVVCNGFDFDVNTCRWIGC 213
>02_02_0010 - 6077666-6077756,6078017-6078108
Length = 60
Score = 28.7 bits (61), Expect = 5.2
Identities = 12/24 (50%), Positives = 14/24 (58%), Gaps = 4/24 (16%)
Frame = +3
Query: 429 LCCVFNICCY----HWGKCWICCC 488
LCC F CCY H +C+ CCC
Sbjct: 35 LCCCF--CCYETCEHCLECFCCCC 56
>04_03_0136 - 11691152-11691268
Length = 38
Score = 28.3 bits (60), Expect = 6.9
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 143 KSPHLLRKCLDVTRAMSQLYQE 208
+SPHLLR+CL + R + ++E
Sbjct: 13 RSPHLLRRCLGLLRGFEEDFKE 34
>04_01_0356 + 4663723-4664253
Length = 176
Score = 28.3 bits (60), Expect = 6.9
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +1
Query: 373 DHWPWFKYEFFYCSIMALAYVVCSI 447
D PW Y F+YC+ + A VC I
Sbjct: 62 DKSPWRYYVFYYCNATSFASSVCII 86
>10_05_0034 +
8431753-8431790,8431940-8432063,8432726-8433038,
8433189-8433251,8433778-8434058
Length = 272
Score = 27.9 bits (59), Expect = 9.1
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 49 KITLHVTQLF*LVQSNKEKMFDNFHNNQTVA-QEPPPPKKVLRCD 180
++T HVT QS+ + +N + Q A EP PP+ V RC+
Sbjct: 21 RLTAHVTSSIVHEQSSNIRYGENRKHGQRYAYHEPLPPEIVARCN 65
>06_01_0179 -
1388602-1389572,1390060-1390129,1390346-1390439,
1390587-1390687,1391152-1391220,1391328-1391482,
1392193-1392241,1392611-1392739,1392825-1393580,
1394711-1394902
Length = 861
Score = 27.9 bits (59), Expect = 9.1
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Frame = -3
Query: 523 IHRHRLPPIQRKQQH--IQHFPQW*Q-QI-LNTQHKLRP 419
IH+H+L IQ++QQH +Q F Q Q Q+ + Q +LRP
Sbjct: 240 IHQHKLAQIQQQQQHQMLQPFSQIQQSQVGIPRQPQLRP 278
>02_05_1193 - 34880269-34880459,34880531-34880633
Length = 97
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = -1
Query: 555 VPSFVFLVSIKSIGTGCHQSKENNSISNTFPNGSSK 448
VP+ + L+ + S CH S+E+ I NT GSSK
Sbjct: 15 VPAALLLLVVSS----CHASREHPDIRNTMAVGSSK 46
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,090,825
Number of Sequences: 37544
Number of extensions: 434617
Number of successful extensions: 1086
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1050
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1086
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1980691104
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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