Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc17m01
(747 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97013-1|AAB52340.2| 270|Caenorhabditis elegans Hypothetical pr... 61 9e-10
U97013-2|AAV58868.1| 190|Caenorhabditis elegans Hypothetical pr... 60 2e-09
U97017-4|AAB52358.1| 156|Caenorhabditis elegans Hypothetical pr... 37 0.013
AL132949-10|CAB61082.1| 721|Caenorhabditis elegans Hypothetical... 35 0.053
U67953-3|AAL13328.1| 321|Caenorhabditis elegans Hypothetical pr... 32 0.50
Z73969-5|CAA98231.1| 178|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical pr... 29 2.6
Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical p... 29 2.6
Z73969-13|CAE17698.1| 73|Caenorhabditis elegans Hypothetical p... 29 3.5
Z71186-5|CAD56578.1| 101|Caenorhabditis elegans Hypothetical pr... 29 3.5
U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical pr... 29 4.6
AF125958-1|AAD14729.1| 342|Caenorhabditis elegans Serpentine re... 29 4.6
Z81027-2|CAB02687.1| 282|Caenorhabditis elegans Hypothetical pr... 28 6.1
U64835-4|AAG24197.2| 343|Caenorhabditis elegans Serpentine rece... 28 6.1
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 28 6.1
AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transpor... 28 6.1
Z30973-2|CAA83221.2| 163|Caenorhabditis elegans Hypothetical pr... 28 8.1
>U97013-1|AAB52340.2| 270|Caenorhabditis elegans Hypothetical
protein F28H1.4a protein.
Length = 270
Score = 60.9 bits (141), Expect = 9e-10
Identities = 44/171 (25%), Positives = 74/171 (43%), Gaps = 16/171 (9%)
Frame = +1
Query: 88 QSNKEKMFDN--FHNNQTVAQE--------PPPPKKVLRCDKSYVTTIPGILKIVQVCCN 237
+ KEKM+D+ + TV + P + R D Y+ T+ GI+KIV +
Sbjct: 75 EQKKEKMYDSPRYQTTTTVVETTEYIGNDGPAVRIEFPRLDCEYIRTLGGIMKIVCIVLC 134
Query: 238 IIGFICIKVSWSWVSAIFY-NMVYWIGNILTILLLLAYTCHFVEKYDHWPWFKYEFFYCS 414
++ FI + + ++ + + + V +G +T LL Y V+ W E YC
Sbjct: 135 LLTFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLYLFRVVDTLPSINWIVCEMVYCF 194
Query: 415 IMALAYVVCSIFAATIGE----SVGYAVV-FFGLVATCAYGFDAYQKYKGW 552
+ + + + A + +A+ FF A CAYGFD Y K+ W
Sbjct: 195 AWTVFFFIAACVLAVASSQFRGTFAWAIAAFFAFGAMCAYGFDCYLKFLSW 245
>U97013-2|AAV58868.1| 190|Caenorhabditis elegans Hypothetical
protein F28H1.4b protein.
Length = 190
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/133 (27%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Frame = +1
Query: 172 RCDKSYVTTIPGILKIVQVCCNIIGFICIKVSWSWVSAIFY-NMVYWIGNILTILLLLAY 348
R D Y+ T+ GI+KIV + ++ FI + + ++ + + + V +G +T LL Y
Sbjct: 33 RLDCEYIRTLGGIMKIVCIVLCLLTFIFVMMGPAYYTGVGWATFVSSVGIFVTTSLLTLY 92
Query: 349 TCHFVEKYDHWPWFKYEFFYCSIMALAYVVCSIFAATIGE----SVGYAVV-FFGLVATC 513
V+ W E YC + + + + A + +A+ FF A C
Sbjct: 93 LFRVVDTLPSINWIVCEMVYCFAWTVFFFIAACVLAVASSQFRGTFAWAIAAFFAFGAMC 152
Query: 514 AYGFDAYQKYKGW 552
AYGFD Y K+ W
Sbjct: 153 AYGFDCYLKFLSW 165
>U97017-4|AAB52358.1| 156|Caenorhabditis elegans Hypothetical
protein F47B3.3 protein.
Length = 156
Score = 37.1 bits (82), Expect = 0.013
Identities = 20/51 (39%), Positives = 25/51 (49%)
Frame = +1
Query: 400 FFYCSIMALAYVVCSIFAATIGESVGYAVVFFGLVATCAYGFDAYQKYKGW 552
FF+ + LA V S F T ++ FF A CAYGFD Y K+ W
Sbjct: 85 FFFIAACVLA-VASSQFRGTFAWAIA---AFFAFGAMCAYGFDCYLKFLSW 131
>AL132949-10|CAB61082.1| 721|Caenorhabditis elegans Hypothetical
protein Y53F4B.12 protein.
Length = 721
Score = 35.1 bits (77), Expect = 0.053
Identities = 16/52 (30%), Positives = 27/52 (51%), Gaps = 2/52 (3%)
Frame = +1
Query: 316 NILTILLLLAYTCHFVEKYDHWP--WFKYEFFYCSIMALAYVVCSIFAATIG 465
++L + LL+A +C V + P W K EFF+ + Y +C++ A G
Sbjct: 188 SLLAVTLLIAASCTMVAFFHSDPENWIKAEFFHFGYQGVLYAICALCACYTG 239
>U67953-3|AAL13328.1| 321|Caenorhabditis elegans Hypothetical
protein ZC13.2 protein.
Length = 321
Score = 31.9 bits (69), Expect = 0.50
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 217 IVQVCCNIIGFICIKVSWSWVSAIFY 294
++ CC +GF+CI ++ WV I Y
Sbjct: 245 VILFCCAFLGFVCITLNCGWVKYIDY 270
>Z73969-5|CAA98231.1| 178|Caenorhabditis elegans Hypothetical
protein C12D8.6 protein.
Length = 178
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +1
Query: 409 CSIMALAYVVCSIFAATIGESVGYAVVFFGLVATCAYGFDAYQKYKGWNRG 561
C + LA +CSI + GYA ++ YG+ AY Y G+ G
Sbjct: 110 CLLCVLAIAMCSIVQEASAQYYGYASSYYPSYYG-GYGYGAYGAYGGYGLG 159
>Z67882-6|CAA91804.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Frame = +1
Query: 250 ICIKVSWSWVSA-----IFYNMVYWIG---NILTILLLLAYTCHFVEKYDHWPWFKYE-- 399
+C+K W +V I N++ WIG N++T+L+L +++ E W + +
Sbjct: 47 LCMKRWWEFVITLCPMWIAPNLITWIGLVINLITVLVLSSFSYSATESAPSWAYLQAALG 106
Query: 400 -FFYCSIMAL 426
FFY ++ A+
Sbjct: 107 LFFYQTLDAI 116
>Z50797-10|CAA90677.1| 406|Caenorhabditis elegans Hypothetical
protein F22E10.5 protein.
Length = 406
Score = 29.5 bits (63), Expect = 2.6
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
Frame = +1
Query: 250 ICIKVSWSWVSA-----IFYNMVYWIG---NILTILLLLAYTCHFVEKYDHWPWFKYE-- 399
+C+K W +V I N++ WIG N++T+L+L +++ E W + +
Sbjct: 47 LCMKRWWEFVITLCPMWIAPNLITWIGLVINLITVLVLSSFSYSATESAPSWAYLQAALG 106
Query: 400 -FFYCSIMAL 426
FFY ++ A+
Sbjct: 107 LFFYQTLDAI 116
>Z73969-13|CAE17698.1| 73|Caenorhabditis elegans Hypothetical
protein C12D8.17 protein.
Length = 73
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Frame = +1
Query: 415 IMALAYVVCSIFAATIGESVGYAVVFFGLVATCAYGFDAYQKYKGWNRG 561
+ LA +CSI + GYA ++ YG+ AY+ Y G+ G
Sbjct: 7 LCVLAIAMCSIVQEASAQYYGYASSYYPSYYG-GYGYGAYRAYGGYGLG 54
>Z71186-5|CAD56578.1| 101|Caenorhabditis elegans Hypothetical
protein F23D12.6 protein.
Length = 101
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = +1
Query: 415 IMALAYVVCSIFAATIGESVGYAVVFFGLVATCAYGFDAYQKYKGWNRG 561
+ LA V+CSI + GYA ++ YG+ AY Y G+ G
Sbjct: 35 LCVLALVMCSIVQDASAQYYGYASSYYPSYYG-GYGYGAYGAYGGYGLG 82
>U23513-4|AAP68947.1| 322|Caenorhabditis elegans Hypothetical
protein D2021.2a protein.
Length = 322
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 2/69 (2%)
Frame = +1
Query: 247 FICIKVSWSWVSAIFYNMVYWIGNILTILLLLAYTCHFVEKYDHW--PWFKYEFFYCSIM 420
F+ + + + + + + Y + IL++L+++ Y HW PW+ F S++
Sbjct: 62 FLMVLIRFDYHDPTYKLLPYGVTIAEAILMVLSWSA-----YAHWYVPWWAQMLFVLSVL 116
Query: 421 ALAYVVCSI 447
ALA+ + I
Sbjct: 117 ALAFTLFRI 125
>AF125958-1|AAD14729.1| 342|Caenorhabditis elegans Serpentine
receptor, class j protein9 protein.
Length = 342
Score = 28.7 bits (61), Expect = 4.6
Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 217 IVQVCCNIIGFICIKVSWSWVSAIF-YNMVYWIGNILTILL 336
I+Q C IIG V SW + IF NM +W N+ T+ +
Sbjct: 252 IIQTCIPIIGSFLPTVI-SWYAPIFGVNMEWWNMNVATVAM 291
>Z81027-2|CAB02687.1| 282|Caenorhabditis elegans Hypothetical
protein AH10.3 protein.
Length = 282
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = -1
Query: 633 CIVYVC*SKVSQLFAVFKFSLWWQTPVPSFVFLVSIKSI 517
C + SKV L F SL+W P P F + + K +
Sbjct: 154 CCSIITISKVEPLIKKFLQSLFWSPPPPQFTSISTFKQL 192
>U64835-4|AAG24197.2| 343|Caenorhabditis elegans Serpentine
receptor, class g (gamma)protein 25 protein.
Length = 343
Score = 28.3 bits (60), Expect = 6.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -2
Query: 635 FALCMFAKVKSVSYLQSLNFHCGGRPLFHPLYFW 534
F FAK+ S+S L + F C P++H + FW
Sbjct: 114 FNYFQFAKIFSISLLSANRFTCVAYPIWHKV-FW 146
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element on
autosome protein2 protein.
Length = 1758
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/39 (38%), Positives = 20/39 (51%)
Frame = -3
Query: 538 FGKHQIHRHRLPPIQRKQQHIQHFPQW*QQILNTQHKLR 422
FG Q +H P Q QQH Q PQ QQ+ N ++ +
Sbjct: 1452 FGYQQYSQH---PQQHPQQHPQQHPQQQQQVWNPNYEFQ 1487
>AF000264-2|AAC71121.1| 761|Caenorhabditis elegans Half transporter
(pgp related)protein 2 protein.
Length = 761
Score = 28.3 bits (60), Expect = 6.1
Identities = 15/45 (33%), Positives = 22/45 (48%)
Frame = +1
Query: 328 ILLLLAYTCHFVEKYDHWPWFKYEFFYCSIMALAYVVCSIFAATI 462
+L LL+Y H WPWF F + ++ ALA V + A +
Sbjct: 185 LLRLLSYCGH------QWPWFASGFVFLTVYALARVFIPNYTAQV 223
>Z30973-2|CAA83221.2| 163|Caenorhabditis elegans Hypothetical
protein B0284.3 protein.
Length = 163
Score = 27.9 bits (59), Expect = 8.1
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 567 WQTPVPSFVFLVSIKSIGTGCHQSKENNSISN 472
W +PVPS +I SI T C +S + SN
Sbjct: 103 WASPVPSSCHPANISSIATKCKKSFPSEKPSN 134
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,960,806
Number of Sequences: 27780
Number of extensions: 404622
Number of successful extensions: 1159
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1766990064
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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